Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002117.1 Kokia drynarioides strain JFW-HI SEQ_114044, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4002
ACGTcount: A:0.35, C:0.18, G:0.13, T:0.34


Found at i:3969 original size:25 final size:26

Alignment explanation


    Indices: 3941--3989  Score: 66
    Period size: 25  Copynumber: 1.9  Consensus size: 26

       3931 AATAAATAAA

                                       
       3941 CAAAAAAAATCAA-TAAAT-TAAATGT
          1 CAAAAAAAA-CAACTAAATATAAATGT

                 *                  
       3966 CAAAATAAACAACTAAATATAAAT
          1 CAAAAAAAACAACTAAATATAAAT

       3990 AATAATAAAA


Statistics
Matches: 21,  Mismatches: 1, Indels: 3
        0.84            0.04        0.12

Matches are distributed among these distances:
  24    3  0.14
  25   13  0.62
  26    5  0.24

ACGTcount: A:0.65, C:0.10, G:0.02, T:0.22


Consensus pattern (26 bp):   
CAAAAAAAACAACTAAATATAAATGT
Done.