Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002118.1 Kokia drynarioides strain JFW-HI SEQ_114046, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6823
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33


Found at i:1747 original size:48 final size:48

Alignment explanation


    Indices: 1677--1794  Score: 166
    Period size: 48  Copynumber: 2.5  Consensus size: 48

       1667 TATTTATGCT

                          *                            *  * 
       1677 TCATTAAGT-TTTTTTTTGTTAAATGCATCTTTGTTTAATAATCTATA
          1 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATATACA

                                                  *      *  
       1724 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAGTAATATGCA
          1 TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATATACA

             *     *               
       1772 TTATTAACTGTTTTGTTTGTTAA
          1 TCATTAAGTGTTTTGTTTGTTAA

       1795 TGCCTTGCAT


Statistics
Matches: 63,  Mismatches: 7, Indels: 1
        0.89            0.10        0.01

Matches are distributed among these distances:
  47    9  0.14
  48   54  0.86

ACGTcount: A:0.25, C:0.08, G:0.13, T:0.54


Consensus pattern (48 bp):   
TCATTAAGTGTTTTGTTTGTTAAATGCATCTTTGTTTAATAATATACA
Done.