Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01002121.1 Kokia drynarioides strain JFW-HI SEQ_114052, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 19676
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Found at i:192 original size:6 final size:6
Alignment explanation
Indices: 170--249 Score: 58
Period size: 6 Copynumber: 13.3 Consensus size: 6
160 ATTTAAATCC
**
170 ATTTAA ATTCT-A A-TTAA ATTTAA ATTTAA A-GCAA ATTTAA ATTTAAA
1 ATTTAA ATT-TAA ATTTAA ATTTAA ATTTAA ATTTAA ATTTAA ATTT-AA
** **
217 AGATAA ATTTAA ATTTAAA AAATAA ATTTAA AT
1 ATTTAA ATTTAA ATTT-AA ATTTAA ATTTAA AT
250 CAATTTAAAC
Statistics
Matches: 56, Mismatches: 12, Indels: 12
0.70 0.15 0.15
Matches are distributed among these distances:
4 1 0.02
5 6 0.11
6 40 0.71
7 9 0.16
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.40
Consensus pattern (6 bp):
ATTTAA
Found at i:226 original size:19 final size:19
Alignment explanation
Indices: 184--249 Score: 100
Period size: 19 Copynumber: 3.6 Consensus size: 19
174 AAATTCTAAT
184 TAAATTTAAATTT-AAAG-
1 TAAATTTAAATTTAAAAGA
*
201 CAAATTTAAATTTAAAAGA
1 TAAATTTAAATTTAAAAGA
*
220 TAAATTTAAATTTAAAAAA
1 TAAATTTAAATTTAAAAGA
239 TAAATTTAAAT
1 TAAATTTAAAT
250 CAATTTAAAC
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
17 12 0.27
18 4 0.09
19 28 0.64
ACGTcount: A:0.58, C:0.02, G:0.03, T:0.38
Consensus pattern (19 bp):
TAAATTTAAATTTAAAAGA
Found at i:940 original size:205 final size:205
Alignment explanation
Indices: 588--1351 Score: 1086
Period size: 205 Copynumber: 3.7 Consensus size: 205
578 TTGACTTGAC
* * * * **
588 CTTCTCAGTACCTCATCAGGAAACTAACCGTTTATTGCTTCAACCTGCTTCTTGGTGTCTCATCA
1 CTTCTCAGTATCTCATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCA
* * *
653 GGAGGTTG-GGATTCGAAGATTTGTTTACATCGAGCGTGGGTTTGATTTGGTCTTCTTCTCAGTA
66 GGAAGTTGTGG-TTCGAAGATTTGTTCACATCGAGCATGGGTTTGATTTGGTCTTCTTCTCAGTA
*
717 TCTCATCAGGAAGATGACCGCGTCGTTTATTTCAATCCGCTTCTCTGTATCTCATCAGGAAGACG
130 TCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATCCGCTTCTCTGTATCTCATCAGGAAGACG
782 AATTTGGTCCA
195 AATTTGGTCCA
* * *
793 CTTCTCAGTATCTCATCAAGAAGCTAACCTTTTATTGCTTCGACCTG-TCTCTCAATGTTTCATC
1 CTTCTCAGTATCTCATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCT-TCTCAGTGTCTCATC
* * * *
857 AGGAGGTTG-GGATTCGAAGATTTGTTTACATCAAGCGTGGGTTTGATTTGGTCTTCTTCTCAGT
65 AGGAAGTTGTGG-TTCGAAGATTTGTTCACATCGAGCATGGGTTTGATTTGGTCTTCTTCTCAGT
* *
921 ATCTTATCAGGAAGATGACCGCGTCGTTTGTTTCAATCCGCTTCTCTGTATCTTATCAGGAAGAC
129 ATCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATCCGCTTCTCTGTATCTCATCAGGAAGAC
986 GAATTTGGTCCA
194 GAATTTGGTCCA
* * *
998 CTTCTCAGTATCTCATCAGGAAGCTAACCTTTTATTGCTTCGACCT-ATCTCTCAGTGTCGCATT
1 CTTCTCAGTATCTCATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCT-TCTCAGTGTCTCATC
* ** * *
1062 AGGAAGCTGTGGTTCGAAGATTTGTTCACATCGAGCATGAATTTTATTTGGTCTTCTTCTTAGTA
65 AGGAAGTTGTGGTTCGAAGATTTGTTCACATCGAGCATGGGTTTGATTTGGTCTTCTTCTCAGTA
* * * *
1127 TCTTATCAGGAAGATGACTGCGTCGTTTGTTTCAATTCACTTCTCTGTATCTCATCAGGAAGACG
130 TCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATCCGCTTCTCTGTATCTCATCAGGAAGACG
1192 AATTTGGTCCA
195 AATTTGGTCCA
* * * * *
1203 TTTCTCAGTATCTCATCAGGAAGCTAACTGTTTTATTGCTTCGACTTGCTTCTCGGTGTCACATC
1 CTTCTCAGTATCTCATCAGGAAGCTAAC-CTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATC
* * *
1268 AGGAAGTTGTGGTTCGAAGATTTATTCACATCGAGCATGGGTTTAATTTAGTCTTCTTCTCAGTA
65 AGGAAGTTGTGGTTCGAAGATTTGTTCACATCGAGCATGGGTTTGATTTGGTCTTCTTCTCAGTA
* *
1333 TCTCATCTGGCAGATGACC
130 TCTCATCAGGAAGATGACC
1352 ATTTTGTTGT
Statistics
Matches: 505, Mismatches: 49, Indels: 9
0.90 0.09 0.02
Matches are distributed among these distances:
204 1 0.00
205 400 0.79
206 103 0.20
207 1 0.00
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.37
Consensus pattern (205 bp):
CTTCTCAGTATCTCATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCA
GGAAGTTGTGGTTCGAAGATTTGTTCACATCGAGCATGGGTTTGATTTGGTCTTCTTCTCAGTAT
CTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATCCGCTTCTCTGTATCTCATCAGGAAGACGA
ATTTGGTCCA
Found at i:12610 original size:28 final size:28
Alignment explanation
Indices: 12565--12626 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 28
12555 AAATGAGACT
*
12565 TTTTGGATACTCAGGGGTAAAATGGTAA
1 TTTTGGATACTCAAGGGTAAAATGGTAA
** * * *
12593 TTTTGGATTGTCAAGGGTGAAATTGTAG
1 TTTTGGATACTCAAGGGTAAAATGGTAA
12621 TTTTGG
1 TTTTGG
12627 CAAAAGGATA
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.26, C:0.05, G:0.31, T:0.39
Consensus pattern (28 bp):
TTTTGGATACTCAAGGGTAAAATGGTAA
Found at i:12747 original size:59 final size:59
Alignment explanation
Indices: 12682--12948 Score: 301
Period size: 59 Copynumber: 4.5 Consensus size: 59
12672 GGACATCTGA
** * * *
12682 GGGTAAAATGGTAATTTTAGGGAGTTTCAGGGTCAAAAATGGGAATTTTGGAAGTTAGG
1 GGGTAAAAACGTAATTTTTGGAAGTTTCAGGGTCAAAAATGGGATTTTTGGAAGTTAGG
* * * *
12741 GAGTAAAAACGGAATTTTTGGAAGTTTCTA-GGTTAAAAATGGGATTTTTGGAAGTTCGG
1 GGGTAAAAACGTAATTTTTGGAAGTTTC-AGGGTCAAAAATGGGATTTTTGGAAGTTAGG
* * * *
12800 GGGTAAAAACG-AAATTTTGGAAGTTTCGGGGTAAAAAATGGGATTTTTGGAAGTTCGG
1 GGGTAAAAACGTAATTTTTGGAAGTTTCAGGGTCAAAAATGGGATTTTTGGAAGTTAGG
* *
12858 GGGTAAAAACATAATTTTTGGAAGTTT-TGGTGTCAAAAATGGGATTTTTGGAAGTTCA-G
1 GGGTAAAAACGTAATTTTTGGAAGTTTCAGG-GTCAAAAATGGGATTTTTGGAAGTT-AGG
** *
12917 GGGTAAAAACAAAAATTTTGGATAGTTT-AGGG
1 GGGTAAAAACGTAATTTTTGGA-AGTTTCAGGG
12949 ACCTTCGGAG
Statistics
Matches: 181, Mismatches: 21, Indels: 12
0.85 0.10 0.06
Matches are distributed among these distances:
58 55 0.30
59 118 0.65
60 8 0.04
ACGTcount: A:0.33, C:0.04, G:0.30, T:0.32
Consensus pattern (59 bp):
GGGTAAAAACGTAATTTTTGGAAGTTTCAGGGTCAAAAATGGGATTTTTGGAAGTTAGG
Found at i:12788 original size:30 final size:30
Alignment explanation
Indices: 12686--12925 Score: 190
Period size: 29 Copynumber: 8.1 Consensus size: 30
12676 ATCTGAGGGT
* * * *
12686 AAAATGGTAATTTTAGGGAGTTTCAGGGTCA
1 AAAATGG-AATTTTTGGAAGTTTCGGGGTTA
*
12717 AAAATGGGAA-TTTTGGAAG-TTAGGGAG-TA
1 AAAAT-GGAATTTTTGGAAGTTTCGGG-GTTA
* **
12746 AAAACGGAATTTTTGGAAGTTTCTAGGTTA
1 AAAATGGAATTTTTGGAAGTTTCGGGGTTA
* *
12776 AAAATGGGATTTTTGGAAG-TTCGGGGGTA
1 AAAATGGAATTTTTGGAAGTTTCGGGGTTA
* * *
12805 AAAA-CGAAATTTTGGAAGTTTCGGGGTAA
1 AAAATGGAATTTTTGGAAGTTTCGGGGTTA
* *
12834 AAAATGGGATTTTTGGAAG-TTCGGGGGTA
1 AAAATGGAATTTTTGGAAGTTTCGGGGTTA
*** * * *
12863 AAAACATAATTTTTGGAAGTTTTGGTGTCA
1 AAAATGGAATTTTTGGAAGTTTCGGGGTTA
*
12893 AAAATGGGATTTTTGGAAG-TTCAGGGG-TA
1 AAAATGGAATTTTTGGAAGTTTC-GGGGTTA
12922 AAAA
1 AAAA
12926 CAAAAATTTT
Statistics
Matches: 161, Mismatches: 39, Indels: 20
0.73 0.18 0.09
Matches are distributed among these distances:
28 15 0.09
29 72 0.45
30 65 0.40
31 7 0.04
32 2 0.01
ACGTcount: A:0.34, C:0.05, G:0.30, T:0.32
Consensus pattern (30 bp):
AAAATGGAATTTTTGGAAGTTTCGGGGTTA
Found at i:12852 original size:117 final size:118
Alignment explanation
Indices: 12694--12948 Score: 356
Period size: 117 Copynumber: 2.2 Consensus size: 118
12684 GTAAAATGGT
* * *
12694 AATTTTAGGGAGTTTCAGGGTCAAAAATGGGAATTTTGGAAGTTAGGGAGTAAAAACGGAATTTT
1 AATTTT-GGAAGTTTCAGGGTAAAAAATGGGAATTTTGGAAGTTAGGGAGTAAAAACAGAATTTT
* *
12759 TGGAAGTTTCTAGGT-T-AAAAATGGGATTTTTGGAAGTTCGGGGGTAAAAAC-GA
65 TGGAAGTTT-T-GGTGTCAAAAATGGGATTTTTGGAAGTTCAGGGGTAAAAACAAA
* * * * *
12812 AATTTTGGAAGTTTCGGGGTAAAAAATGGGATTTTTGGAAGTTCGGGGGTAAAAACATAATTTTT
1 AATTTTGGAAGTTTCAGGGTAAAAAATGGGAATTTTGGAAGTTAGGGAGTAAAAACAGAATTTTT
12877 GGAAGTTTTGGTGTCAAAAATGGGATTTTTGGAAGTTCAGGGGTAAAAACAAA
66 GGAAGTTTTGGTGTCAAAAATGGGATTTTTGGAAGTTCAGGGGTAAAAACAAA
12930 AATTTTGGATAGTTT-AGGG
1 AATTTTGGA-AGTTTCAGGG
12949 ACCTTCGGAG
Statistics
Matches: 122, Mismatches: 11, Indels: 8
0.87 0.08 0.06
Matches are distributed among these distances:
115 3 0.02
116 2 0.02
117 93 0.76
118 19 0.16
119 5 0.04
ACGTcount: A:0.33, C:0.05, G:0.30, T:0.32
Consensus pattern (118 bp):
AATTTTGGAAGTTTCAGGGTAAAAAATGGGAATTTTGGAAGTTAGGGAGTAAAAACAGAATTTTT
GGAAGTTTTGGTGTCAAAAATGGGATTTTTGGAAGTTCAGGGGTAAAAACAAA
Found at i:12935 original size:29 final size:29
Alignment explanation
Indices: 12727--12948 Score: 166
Period size: 30 Copynumber: 7.6 Consensus size: 29
12717 AAAATGGGAA
*
12727 TTTTGGAAGTT-AGGGAGTAAAAACGGAAT
1 TTTTGGAAGTTCAGGG-GTAAAAACAGAAT
* ** *
12756 TTTTGGAAGTTTCTA-GGTTAAAAATGGGAT
1 TTTTGGAAG-TTC-AGGGGTAAAAACAGAAT
* *
12786 TTTTGGAAGTTCGGGGGTAAAAAC-GAAA
1 TTTTGGAAGTTCAGGGGTAAAAACAGAAT
*
12814 TTTTGGAAGTTTC-GGGGTAAAAA-ATGGGAT
1 TTTTGGAAG-TTCAGGGGTAAAAACA--GAAT
* *
12844 TTTTGGAAGTTCGGGGGTAAAAACATAAT
1 TTTTGGAAGTTCAGGGGTAAAAACAGAAT
** * ** *
12873 TTTTGGAAGTTTTGGTGTCAAAAATGGGAT
1 TTTTGGAAGTTCAGGGGT-AAAAACAGAAT
* *
12903 TTTTGGAAGTTCAGGGGTAAAAACAAAAA
1 TTTTGGAAGTTCAGGGGTAAAAACAGAAT
*
12932 TTTTGGATAGTTTAGGG
1 TTTTGGA-AGTTCAGGG
12949 ACCTTCGGAG
Statistics
Matches: 153, Mismatches: 28, Indels: 23
0.75 0.14 0.11
Matches are distributed among these distances:
28 21 0.14
29 56 0.37
30 72 0.47
31 3 0.02
32 1 0.01
ACGTcount: A:0.33, C:0.05, G:0.30, T:0.33
Consensus pattern (29 bp):
TTTTGGAAGTTCAGGGGTAAAAACAGAAT
Found at i:12935 original size:30 final size:29
Alignment explanation
Indices: 12727--12948 Score: 166
Period size: 29 Copynumber: 7.6 Consensus size: 29
12717 AAAATGGGAA
*
12727 TTTTGGAAGTT-AGGGAGTAAAAACGGAAT
1 TTTTGGAAGTTCAGGG-GTAAAAACGAAAT
* * **
12756 TTTTGGAAGTTTCTA-GGTTAAAAATGGGAT
1 TTTTGGAAG-TTC-AGGGGTAAAAACGAAAT
*
12786 TTTTGGAAGTTCGGGGGTAAAAACGAAA-
1 TTTTGGAAGTTCAGGGGTAAAAACGAAAT
* **
12814 TTTTGGAAGTTTC-GGGGTAAAAAATGGGAT
1 TTTTGGAAG-TTCAGGGGT-AAAAACGAAAT
*
12844 TTTTGGAAGTTCGGGGGTAAAAAC-ATAAT
1 TTTTGGAAGTTCAGGGGTAAAAACGA-AAT
** * * **
12873 TTTTGGAAGTTTTGGTGTCAAAAATGGGAT
1 TTTTGGAAGTTCAGGGGT-AAAAACGAAAT
* *
12903 TTTTGGAAGTTCAGGGGTAAAAACAAAAA
1 TTTTGGAAGTTCAGGGGTAAAAACGAAAT
*
12932 TTTTGGATAGTTTAGGG
1 TTTTGGA-AGTTCAGGG
12949 ACCTTCGGAG
Statistics
Matches: 152, Mismatches: 29, Indels: 23
0.75 0.14 0.11
Matches are distributed among these distances:
28 14 0.09
29 70 0.46
30 65 0.43
31 2 0.01
32 1 0.01
ACGTcount: A:0.33, C:0.05, G:0.30, T:0.33
Consensus pattern (29 bp):
TTTTGGAAGTTCAGGGGTAAAAACGAAAT
Found at i:13933 original size:21 final size:20
Alignment explanation
Indices: 13907--13956 Score: 73
Period size: 21 Copynumber: 2.4 Consensus size: 20
13897 TTCCCTTTTT
13907 TATTATTAAAACAATATTTAA
1 TATTATTAAAA-AATATTTAA
*
13928 TATTATTTAAAAAATATTTAT
1 TATTA-TTAAAAAATATTTAA
13949 TATTATTA
1 TATTATTA
13957 TCAATATATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 3 0.11
21 18 0.67
22 6 0.22
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (20 bp):
TATTATTAAAAAATATTTAA
Found at i:14736 original size:6 final size:6
Alignment explanation
Indices: 14727--14796 Score: 63
Period size: 6 Copynumber: 11.8 Consensus size: 6
14717 TACATTCTAA
* ** * *
14727 TTAAAT TTAAAT TTTAA- GCAAAT TTAAAT TTAAAAG ATAAAT TTAAAT
1 TTAAAT TTAAAT TTAAAT TTAAAT TTAAAT TT-AAAT TTAAAT TTAAAT
*
14775 TTAAA- ATAAAT TTAAAT TTAAA
1 TTAAAT TTAAAT TTAAAT TTAAA
14797 AATAAATTTG
Statistics
Matches: 49, Mismatches: 12, Indels: 6
0.73 0.18 0.09
Matches are distributed among these distances:
5 6 0.12
6 39 0.80
7 4 0.08
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.41
Consensus pattern (6 bp):
TTAAAT
Found at i:14773 original size:36 final size:35
Alignment explanation
Indices: 14728--14805 Score: 120
Period size: 36 Copynumber: 2.2 Consensus size: 35
14718 ACATTCTAAT
* *
14728 TAAATTTAAATTTTAAGCAAATTTAAATTTAAAAGA
1 TAAATTTAAATTTAAAACAAATTTAAATTTAAAA-A
*
14764 TAAATTTAAATTTAAAATAAATTTAAATTTAAAAA
1 TAAATTTAAATTTAAAACAAATTTAAATTTAAAAA
14799 TAAATTT
1 TAAATTT
14806 GAATCAATTT
Statistics
Matches: 39, Mismatches: 3, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
35 8 0.21
36 31 0.79
ACGTcount: A:0.55, C:0.01, G:0.03, T:0.41
Consensus pattern (35 bp):
TAAATTTAAATTTAAAACAAATTTAAATTTAAAAA
Found at i:14797 original size:17 final size:18
Alignment explanation
Indices: 14728--14805 Score: 106
Period size: 17 Copynumber: 4.4 Consensus size: 18
14718 ACATTCTAAT
* *
14728 TAAATTTAAATTT-TAAG
1 TAAATTTAAATTTAAAAA
*
14745 CAAATTTAAATTTAAAAGA
1 TAAATTTAAATTTAAAA-A
14764 TAAATTTAAATTT-AAAA
1 TAAATTTAAATTTAAAAA
14781 TAAATTTAAATTTAAAAA
1 TAAATTTAAATTTAAAAA
14799 TAAATTT
1 TAAATTT
14806 GAATCAATTT
Statistics
Matches: 54, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
17 26 0.48
18 16 0.30
19 12 0.22
ACGTcount: A:0.55, C:0.01, G:0.03, T:0.41
Consensus pattern (18 bp):
TAAATTTAAATTTAAAAA
Found at i:15503 original size:205 final size:205
Alignment explanation
Indices: 15151--15915 Score: 1083
Period size: 205 Copynumber: 3.7 Consensus size: 205
15141 ACTTGGCCTT
* * * * ** *
15151 CTTCTCAGTACCTCATCAGGAAACTAACCGTTTATTGCTTCGACCTGCTTCTTGGTGTTTCATCA
1 CTTCTCAATATCTCATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCA
* * * *
15216 GGAGGCTG-GGATTCGAAGATTTGTTTACATCGAGCGTGGGTTTGATTTGGTCTTCTTCTTAGTA
66 GGAAGCTGTGG-TTCGAAGATTTGTTCACATCGAGCATGGGTTTGATTTGGTCTTCTTCTCAGTA
*
15280 TCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATTCGCTTCTCTGTATCTCATCAGGAAGATG
130 TCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATTCGCTTCTCTGTATCTCATCAGGAAGACG
15345 AATTTGGTCCA
195 AATTTGGTCCA
* * *
15356 CTTCTCAATATCTCATCAGGAAGCTAACTTTTTATTGCTTCGACCTG-TCTCTCACTGTTTCATC
1 CTTCTCAATATCTCATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCT-TCTCAGTGTCTCATC
* * *
15420 AGGAGGCTG-GGATTCGAAGATTTGTTTACATCGAGCGTGGGTTTGATTTGGTCTTCTTCTCAGT
65 AGGAAGCTGTGG-TTCGAAGATTTGTTCACATCGAGCATGGGTTTGATTTGGTCTTCTTCTCAGT
*
15484 ATCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATCCGCTTCTCTGTATCTCATCAGGAAGAC
129 ATCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATTCGCTTCTCTGTATCTCATCAGGAAGAC
15549 GAATTTGGTCCA
194 GAATTTGGTCCA
* *
15561 CTTCTCAATATCTCATTAGGAAGCTAACCTTTTATTGCTTCGACCTG-TCTCTTAGTGTCTCATC
1 CTTCTCAATATCTCATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCT-TCTCAGTGTCTCATC
* * *
15625 AGGAAGCAGTGGTTCGAAGATTTGTTCACATCGAGCATGGATTTTATTTGGTCTTCTTCTCAGTA
65 AGGAAGCTGTGGTTCGAAGATTTGTTCACATCGAGCATGGGTTTGATTTGGTCTTCTTCTCAGTA
*
15690 TCTCATCAGGAAGATGACCGCGTCGCTTGTTTCAATTCGCTTCTCTGTATCTCATCAGGAAGACG
130 TCTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATTCGCTTCTCTGTATCTCATCAGGAAGACG
*
15755 AATTTAGTCCA
195 AATTTGGTCCA
* * * * * * *
15766 TTTCTCAGTATATCATCAGGAAGCTAATCGTTTTATTGCTTTGACATGCTTCTC-GATGTCACAT
1 CTTCTCAATATCTCATCAGGAAGCTAA-CCTTTTATTGCTTCGACCTGCTTCTCAG-TGTCTCAT
* * * *
15830 CAGGAAGCTGTGGTTCGAAGATTTATTCACATCGAGCATGGGTTTAATCTAGTCTTCTTCTCAGT
64 CAGGAAGCTGTGGTTCGAAGATTTGTTCACATCGAGCATGGGTTTGATTTGGTCTTCTTCTCAGT
*
15895 ATCTCATCTA-GCAGATGACCG
129 ATCTCATC-AGGAAGATGACCG
15916 TTTTGTTGTT
Statistics
Matches: 513, Mismatches: 41, Indels: 11
0.91 0.07 0.02
Matches are distributed among these distances:
204 1 0.00
205 404 0.79
206 106 0.21
207 2 0.00
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.36
Consensus pattern (205 bp):
CTTCTCAATATCTCATCAGGAAGCTAACCTTTTATTGCTTCGACCTGCTTCTCAGTGTCTCATCA
GGAAGCTGTGGTTCGAAGATTTGTTCACATCGAGCATGGGTTTGATTTGGTCTTCTTCTCAGTAT
CTCATCAGGAAGATGACCGCGTCGTTTGTTTCAATTCGCTTCTCTGTATCTCATCAGGAAGACGA
ATTTGGTCCA
Found at i:18075 original size:25 final size:25
Alignment explanation
Indices: 18047--18096 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
18037 TTCTTCTTCC
*
18047 TAAGTACTCATTTGTATGAGCTTTA
1 TAAGTACTCATCTGTATGAGCTTTA
18072 TAAGTACTCATCTGTATGAGCTTTA
1 TAAGTACTCATCTGTATGAGCTTTA
18097 CATTTTTCGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.42
Consensus pattern (25 bp):
TAAGTACTCATCTGTATGAGCTTTA
Done.