Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002124.1 Kokia drynarioides strain JFW-HI SEQ_114055, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 959

Length: 1599
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36


Found at i:754 original size:20 final size:21

Alignment explanation


    Indices: 717--755  Score: 53
    Period size: 20  Copynumber: 1.9  Consensus size: 21

        707 TCATCTTGAC

                        *        
        717 TTTCTTTTTCTTCCTTTTTCT
          1 TTTCTTTTTCTTACTTTTTCT

                         *     
        738 TTTC-TTTTCTTATTTTTT
          1 TTTCTTTTTCTTACTTTTT

        756 TAAGATAACC


Statistics
Matches: 16,  Mismatches: 2, Indels: 1
        0.84            0.11        0.05

Matches are distributed among these distances:
  20   12  0.75
  21    4  0.25

ACGTcount: A:0.03, C:0.18, G:0.00, T:0.79


Consensus pattern (21 bp):   
TTTCTTTTTCTTACTTTTTCT
Done.