genome.fa.s2130.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01002130.1 Kokia drynarioides strain JFW-HI SEQ_114064, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88365

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
427--543	30	3.9	30	81	7	123	29	5	31	33	1.81
401--545	60	2.5	59	77	11	154	30	5	31	32	1.80
1615--1735	12	10.2	12	73	8	97	38	2	3	56	1.29
1641--1703	21	2.9	21	83	4	81	34	3	3	58	1.30
1662--1735	25	2.9	25	72	4	67	36	4	4	55	1.38
2360--2442	17	4.9	17	71	10	62	56	4	4	33	1.42
5095--5163	31	2.3	31	87	7	97	46	21	11	20	1.82
6417--6529	54	2.1	53	80	9	131	37	15	7	39	1.76
14017--14042	3	8.7	3	100	0	52	69	0	0	30	0.89
14969--15008	20	2.0	20	90	9	64	50	12	22	15	1.77
17045--17088	19	2.1	22	88	12	67	56	2	9	31	1.43
33877--34019	77	1.9	77	85	5	200	39	23	13	23	1.90
33944--34188	85	2.9	83	76	6	240	42	20	11	24	1.86
34183--34697	84	6.1	84	82	3	502	41	20	14	24	1.89
33993--34414	234	1.8	234	83	4	564	41	20	13	24	1.88
34183--34697	167	3.1	166	81	2	555	41	20	14	24	1.89
34647--34743	45	2.2	45	90	0	158	40	23	11	24	1.88
36019--36064	25	1.9	23	86	8	65	36	4	4	54	1.40
38496--38855	179	2.0	179	99	0	711	32	15	10	41	1.81
41504--41567	27	2.4	27	78	5	76	39	0	4	56	1.20
46959--47034	18	4.2	17	71	15	55	28	1	2	67	1.12
47156--47203	20	2.4	20	100	0	96	47	0	20	31	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47671--47695	2	12.5	2	100	0	50	52	0	0	48	1.00
53768--53805	20	1.9	20	88	0	58	57	2	0	39	1.12
66910--66954	18	2.5	18	83	16	58	28	0	4	66	1.11
68579--68625	24	2.0	24	83	8	60	40	2	0	57	1.11
68593--68651	25	2.5	26	76	15	65	35	0	3	61	1.13
69139--69181	18	2.4	19	80	11	54	51	2	0	46	1.13
69939--70011	36	2.0	36	82	10	87	58	2	5	32	1.35
75057--75138	40	2.0	40	100	0	164	34	14	7	43	1.73
81058--81087	16	1.9	16	93	6	53	63	3	0	33	1.11
86312--86336	2	12.5	2	100	0	50	52	0	0	48	1.00

Tables:   1

The End!