Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002131.1 Kokia drynarioides strain JFW-HI SEQ_114066, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1745
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32


Found at i:611 original size:9 final size:8

Alignment explanation


    Indices: 595--643  Score: 53
    Period size: 8  Copynumber: 5.9  Consensus size: 8

        585 GTCACGTATA

                    
        595 AAAAAAAG
          1 AAAAAAAG

                     
        603 AAGAAAAAG
          1 AA-AAAAAG

                *    
        612 AAAGCAAAG
          1 AAA-AAAAG

                    
        621 AAAAAAAG
          1 AAAAAAAG

                **  
        629 AAAAGTAG
          1 AAAAAAAG

                   
        637 AAAAAAA
          1 AAAAAAA

        644 TATATTGCTA


Statistics
Matches: 33,  Mismatches: 6, Indels: 4
        0.77            0.14        0.09

Matches are distributed among these distances:
   8   18  0.55
   9   15  0.45

ACGTcount: A:0.80, C:0.02, G:0.16, T:0.02


Consensus pattern (8 bp):   
AAAAAAAG
Done.