Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002132.1 Kokia drynarioides strain JFW-HI SEQ_114067, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3272
ACGTcount: A:0.36, C:0.16, G:0.12, T:0.35


Found at i:3055 original size:12 final size:12

Alignment explanation


    Indices: 3038--3074  Score: 65
    Period size: 12  Copynumber: 3.1  Consensus size: 12

       3028 CTATTAGGAA

                  *     
       3038 ATAATTATCCTT
          1 ATAATTTTCCTT

                        
       3050 ATAATTTTCCTT
          1 ATAATTTTCCTT

                        
       3062 ATAATTTTCCTT
          1 ATAATTTTCCTT

             
       3074 A
          1 A

       3075 AATAATAACA


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  12   24  1.00

ACGTcount: A:0.30, C:0.16, G:0.00, T:0.54


Consensus pattern (12 bp):   
ATAATTTTCCTT

Found at i:3140 original size:42 final size:42

Alignment explanation


    Indices: 3094--3266  Score: 258
    Period size: 42  Copynumber: 4.1  Consensus size: 42

       3084 ATTTAATTAG

                                                      
       3094 TTCAAAAATCATTTTAATAGAAAAGGAAATTTACACCAAGTT
          1 TTCAAAAATCATTTTAATAGAAAAGGAAATTTACACCAAGTT

                       *        *                      
       3136 TTCAAAAATCACTTTAATAGGAAAGGAAATTTACACCAA-TGT
          1 TTCAAAAATCATTTTAATAGAAAAGGAAATTTACACCAAGT-T

                                                  *   
       3178 TTCAAAAATCATTTTAATAGAAAAGGAAATTTACACCATGTT
          1 TTCAAAAATCATTTTAATAGAAAAGGAAATTTACACCAAGTT

              *    *                     *  *    *    
       3220 TTTAAAAGTCATTTTAATAGAAAAGGAAAATTCCACCGAGTT
          1 TTCAAAAATCATTTTAATAGAAAAGGAAATTTACACCAAGTT

                 
       3262 TTCAA
          1 TTCAA

       3267 GGAGGG


Statistics
Matches: 117,  Mismatches: 12, Indels: 4
        0.88            0.09        0.03

Matches are distributed among these distances:
  41    1  0.01
  42  115  0.98
  43    1  0.01

ACGTcount: A:0.45, C:0.13, G:0.11, T:0.31


Consensus pattern (42 bp):   
TTCAAAAATCATTTTAATAGAAAAGGAAATTTACACCAAGTT

Done.