genome.fa.s2141.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01002141.1 Kokia drynarioides strain JFW-HI SEQ_114085, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95308

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
882--944	30	2.1	29	82	2	72	34	30	1	33	1.67
1023--1091	29	2.4	28	76	7	75	33	26	4	36	1.76
1342--1392	22	2.2	24	80	16	63	27	11	0	60	1.31
1350--1392	23	2.0	23	86	9	63	23	13	0	62	1.31
1567--1617	18	2.7	19	75	19	54	19	9	5	64	1.44
3489--3694	26	8.2	26	75	10	153	27	25	16	30	1.97
3516--3694	52	3.6	51	70	10	172	27	24	15	31	1.96
3598--3705	26	4.2	26	86	0	144	29	21	14	34	1.93
5739--5792	21	2.6	21	90	0	81	37	29	22	11	1.89
12277--12330	21	2.6	21	90	0	90	38	31	22	7	1.82
14978--15011	12	2.8	12	100	0	68	23	8	23	44	1.81
15959--16009	14	3.7	14	84	5	77	47	0	0	52	1.00
15951--16014	27	2.4	27	100	0	128	48	0	0	51	1.00
16266--16306	10	4.1	10	83	0	55	24	2	4	68	1.22
18979--19030	19	2.7	19	93	0	86	61	17	15	5	1.52
26362--26406	21	2.1	21	84	8	56	42	8	8	40	1.67
27253--27291	16	2.5	15	87	8	51	48	0	10	41	1.37
29105--29140	19	1.9	19	88	5	56	55	2	0	41	1.14
31625--31700	31	2.5	31	95	0	134	31	13	7	47	1.71
31913--32082	60	2.9	58	78	6	189	50	11	14	24	1.75
32048--32092	22	2.0	22	86	8	63	62	8	4	24	1.43
32896--32968	17	4.1	17	73	16	67	45	20	2	31	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32899--32998	37	2.7	37	84	0	119	46	22	4	28	1.70
33982--34065	29	2.9	29	85	1	98	47	2	21	28	1.63
35329--35378	17	2.9	17	93	3	82	38	4	0	58	1.17
35320--35374	29	1.9	28	85	3	74	40	1	1	56	1.21
35329--35374	6	7.8	6	76	13	51	41	2	0	56	1.11
35441--35480	18	2.2	19	86	13	57	62	12	5	20	1.48
36132--36181	3	17.0	3	78	12	50	64	0	2	34	1.05
36131--36176	19	2.4	19	82	10	58	60	0	2	36	1.09
37112--37561	29	15.4	29	80	12	460	32	29	3	34	1.75
37543--38629	552	2.0	552	99	0	2129	30	19	10	40	1.85
39186--39231	18	2.6	18	85	0	56	32	15	17	34	1.91
39852--39927	21	3.7	21	74	10	75	38	15	6	39	1.74
40427--40496	33	2.1	33	100	0	140	34	14	12	38	1.84
42583--42643	15	3.9	15	77	8	68	52	6	18	22	1.68
42553--42637	32	2.8	31	82	13	97	50	7	20	22	1.71
43833--43988	78	2.0	78	100	0	312	37	19	10	33	1.85
45910--45946	17	2.2	17	100	0	74	35	16	24	24	1.95
52298--53516	23	53.3	23	85	2	1362	47	12	5	35	1.63
53021--53057	16	2.3	16	95	0	65	43	16	0	40	1.48
55025--55083	30	2.0	30	96	0	109	16	6	25	50	1.70
57918--58031	57	2.0	55	88	3	165	47	6	16	29	1.71
60534--60576	21	2.0	21	100	0	86	13	18	32	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63930--63987	24	2.5	22	77	22	57	62	0	0	37	0.96
64659--64712	26	2.1	26	100	0	108	22	22	18	37	1.95
64890--64957	36	1.9	35	84	3	91	32	0	7	60	1.24
67033--67098	32	2.1	31	83	10	82	60	13	3	22	1.47
70806--70885	40	2.0	40	90	0	124	15	31	7	46	1.73
71299--71372	9	8.1	9	68	14	53	67	0	6	25	1.15
71303--71373	18	3.8	18	78	12	81	64	0	7	28	1.19
72206--72538	36	9.2	36	76	1	227	27	13	24	34	1.93
72231--72536	108	2.8	108	80	2	337	27	14	23	34	1.94
72193--72538	72	4.8	72	77	4	293	26	14	23	34	1.94
79527--79767	108	2.2	108	84	0	329	24	14	25	35	1.94
79527--79791	36	7.4	36	77	0	215	23	15	26	35	1.94
82434--82471	16	2.3	17	86	4	51	65	0	31	2	1.06
85808--85861	20	2.8	20	94	2	92	40	0	5	53	1.24
86305--86532	113	2.0	113	98	0	438	32	21	14	31	1.93
92598--92634	18	2.1	18	89	0	56	24	27	0	48	1.51
93078--93131	23	2.3	23	93	0	90	48	12	0	38	1.42

Tables:   1

The End!