Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NTFQ01002148.1 Kokia drynarioides strain JFW-HI SEQ_114097, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2217
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Found at i:418 original size:216 final size:215
Alignment explanation
Indices: 2--2191 Score: 1872
Period size: 216 Copynumber: 10.4 Consensus size: 215
1 G
** * * **
2 GAATGTTCGGGAAATTACTCGAAGGAATGGACCGTCTTGAATACTTTAAGGAACCGAAGTTATTT
1 GAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA
* * *
67 AAGAACTCGTAAAAGTTTAGTTTGACAAGTTTGAAAGTTCAT-CCAAGAACCAAGAGAGAAACAA
66 AAGAACTCGT-AAA----AGTTTGACAAGTTCGGAAGTTC-TGCCAAGAACAAAGAGAGAAACAA
* * * * *
131 TTCTCACGTAAATAAG-TTTTAATTCAAAGACCAAAAGTTGGTTGCAACATGAGAAACTATTTTG
125 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGG
195 ACCAAATGATGCGATTTCCTAAGCAT
190 ACCAAATGATGCGATTTCCTAAGCAT
* * * * * *
221 GGAATATTCGAAAAATTGCTGGAAGGAATGGATCGTCTCGAATACTTTAATGAACTGAACTTATA
1 -GAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATA
* * * * * * * *
286 AAAGAGCTTGTAAAAGTTTTACAAGTTCAGAAGTTCTGCCAATAACAAATAAACAAACAATTCTC
65 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCTGCCAAGAACAAAGAGAGAAACAATTCTC
* * **
351 ACGTAAATAAGTTTTCAATTTAAAGACCAAAAGTTGTTTACAAAACCACAAACTATTTGGACCAA
130 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAA
* **
416 ATGATGCGATTCCCCGAGCAT
195 ATGATGCGATTTCCTAAGCAT
* ** * * * *
437 GAAATGTTC-AGTAAATTGCTCGAAGGAATGGATCGTCTTTCATGCTTTAAGGGACCGATGCTAT
1 G-AATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTAT
* * * * * * * * * *
501 AGAATAAATCATAAAAGTTTGACAAGTTCGAAAGTTCGGCCAAGAACCAGGGGAAAAACAATTCT
64 AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCTGCCAAGAACAAAGAGAGAAACAATTCT
* * * * *
566 CGCGTAAATTACTTTTTAAATCAAAGACCAAAAGTTGTTTACAAAATGA-ATAACTATTTGGACA
129 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACA-AACTATTTGGACC
** **
630 AAATGATGCTCTTTCCCGAGCAT
193 AAATGATGCGATTTCCTAAGCAT
* * * * * * *
653 GGAATGTTCGAGAAATTACTCGAAGGAATAGACCATCTTGAATACTTTAAGGAACCAAAGTTATT
1 -GAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATA
* * *
718 CAAGAGCTCGTAAAAGTTTGACAAG-T------TTCAT-CCAAGAACCAAGAGAGAAACAATTCT
65 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTC-TGCCAAGAACAAAGAGAGAAACAATTCT
* *
775 -ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATAACAAATTATTT-GACCA
129 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCA
*
838 AATGATGTGATTTCCTGAA-CATT
194 AATGATGCGATTTCCT-AAGCA-T
* * * * **
861 AAAAGTTCGAAAAATTGCTCGATGGAATGGATCATCTTGAATACTTTAAGGAACCGAAGTTATTC
1 GAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA
* * * * * *
926 AAGAACTCATACAAGTTTGACAGGTTCGTAAGTT-AGTCCAAGAACCAAGAGAGAATA-AATTCT
66 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCTG-CCAAGAACAAAGAGAGAA-ACAATTCT
* * **
989 CACGTAAATAACTTTTTAAATCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGTTCCA
129 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCA
* *
1054 AATTATGTGATTTCCTGAA-CA-
194 AATGATGCGATTTCCT-AAGCAT
* * * * **
1075 -AATGTT-TAGAAAATTGCTCGAAGGGATGGATCATCTTGAATACTGTAAGGAATTGATA-TTAT
1 GAATGTTCGA-AAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGA-AGTTAT
* * * *
1137 AAAAGAACTCGTAAATGTTTGACAAGTTTGGCAGTTCAT-CCCAGAACAAAGAGAGAAACAATTC
64 AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTC-TGCCAAGAACAAAGAGAGAAACAATTC
* *
1201 TGACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATATGGACC
128 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACC
1266 AAAT--T---A-----T--G--T
193 AAATGATGCGATTTCCTAAGCAT
* *
1275 GAATGTTCTG-AAAATTGCAT-GAAGGAATGGATCGTCTT-AAAACTTTAAGGAA-CAAATGTTA
1 GAATGTTC-GAAAAATTGC-TCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA-GTTA
* * * * *
1336 TAAAAGAAATCGTGAAAGTTTGACAAGGTCGGGAAGTTCGGCCAAGAACAAATAGACG-AACAAT
63 TAAAAGAACTCGTAAAAGTTTGACAAGTTC-GGAAGTTCTGCCAAGAACAAAGAGA-GAAACAAT
* * * * * *
1400 TCTCACGTAAATAAGTTTTTATTTCAATGACCAAAGGTTTTTTACAAAATGACAAACTATATGGT
126 TCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGA
* * * *
1465 TCAAAAGATGTGATTTCC--CG-A-
191 CCAAATGATGCGATTTCCTAAGCAT
* * *
1486 GCATG---G---AA-TGCTCGAA--AA---ATTG-CTCGAATACTTTAAGGAACCGAAGTTATAA
1 GAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA
* * * ** * *
1538 AAGAACTCGTAATAGTTTGACAAGTTCGGAAGTTC-GTCCATGAACCAATTGACAAAAAATTCTC
66 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCTG-CCAAGAACAAAGAGAGAAACAATTCTC
* * * * *
1602 ACGTAAATAAGTTTTCAACTCAAAGACCAAAAGTTGTTTACAAAATAAGAAACAATTTGGACCAA
130 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAA
1667 ATGATGCG--------AGCAT
195 ATGATGCGATTTCCTAAGCAT
* * **
1680 GGAATGTTCAAAAAATTTCTTTAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATA
1 -GAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATA
* * * *
1745 AAA-AATCTCATAAAAGTTTAACAAGTTCGGAAGTTCAT-CCAAGAACCAACAGAGAAACAATTC
65 AAAGAA-CTCGTAAAAGTTTGACAAGTTCGGAAGTTC-TGCCAAGAACAAAGAGAGAAACAATTC
*
1808 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTTTGAC
128 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA-TTTGGAC
1873 CAAAT--T---A-----T--GC--
192 CAAATGATGCGATTTCCTAAGCAT
* * ** * * * *
1883 GAATGTTCTG-AAAATTACTCGAAAGAATGGATCGTCTTTCATGCTTTAAGGGACCGATGCTATA
1 GAATGTTC-GAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATA
* * * * * *
1947 GAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGCCAAGAACCAAGGGAGAAACAATTCTT
65 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCTGCCAAGAACAAAGAGAGAAACAATTCTC
* * * * * * *
2012 GCGTAAATAACTTTTTAAATCAAAGAACAAAAGTTGTTTACAAAATGA-ATTACTGTTTGGACAA
130 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACA-AACTATTTGGACCA
*
2076 AATGATGCGATTT-CTCGAGCAT
194 AATGATGCGATTTCCT-AAGCAT
** * * * * *
2098 GGAATGTTCGGGAAATTACTCGAAGGAATGGACCGTCTTGAATACATTAAGGAACCAAAGTTATC
1 -GAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATA
* * *
2163 CAAGAGCTCGTAAAAGTTTGACAATTTCG
65 AAAGAACTCGTAAAAGTTTGACAAGTTCG
2192 TCCAAGAACC
Statistics
Matches: 1600, Mismatches: 272, Indels: 200
0.77 0.13 0.10
Matches are distributed among these distances:
192 1 0.00
193 1 0.00
195 4 0.00
197 1 0.00
198 91 0.06
199 47 0.03
200 43 0.03
201 132 0.08
202 161 0.10
203 6 0.00
204 8 0.00
205 4 0.00
206 2 0.00
207 102 0.06
208 184 0.12
209 38 0.02
210 1 0.00
211 6 0.00
212 2 0.00
213 164 0.10
214 28 0.02
215 111 0.07
216 397 0.25
217 2 0.00
219 3 0.00
220 61 0.04
ACGTcount: A:0.39, C:0.15, G:0.18, T:0.28
Consensus pattern (215 bp):
GAATGTTCGAAAAATTGCTCGAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA
AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCTGCCAAGAACAAAGAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTGGACCAAA
TGATGCGATTTCCTAAGCAT
Found at i:1434 original size:201 final size:198
Alignment explanation
Indices: 654--2059 Score: 1113
Period size: 213 Copynumber: 6.9 Consensus size: 198
644 CCCGAGCATG
* * * * * * *
654 GAATGTTC-GAGAAATTACTCGAAGGAATAGACCATCTTGAATACTTTAAGGAACCAAAGTTATT
1 GAATGTTCTGA-AAATTGCT-GAAGGAATGGATCGTCTT-AATACTTTAAGGAACGAATGTTATA
* * *
718 CAAGAGCTCGTAAAAGTTTGACAAG-T------TTCATCCAAGAACCAAGAGAGAAACAATTCT-
63 AAAGAACTCGT-AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * *
775 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATAACAAATTAT-TTGACCAA
127 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATATGGACCAA
839 ATGATGTGATTTCCT
192 ATGA--TG------T
* *
854 GAACATTAAAAGTTC-GAAAAATTGCTCGATGGAATGGATCATCTTGAATACTTTAAGGAACCGA
1 G-A-A-T----GTTCTG-AAAATTGCT-GAAGGAATGGATCGTCTT-AATACTTTAAGGAA-CGA
** * * * *
918 A-GTTATTCAAGAACTCATACAAGTTTGACAGGTTCGTAAGTTAGTCCAAGAACCAAGAGAGAAT
55 ATGTTATAAAAGAACTCGTA-AAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAA-
* *
982 A-AATTCTCACGTAAATAACTTTTTAAATCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
118 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
* ** *
1046 TTGTTCCAAATTATGTGATTTCCT
183 ATGGACC-AA--A--TGA--T-GT
* * * * *
1070 GAACAAATGTT-TAGAAAATTGCTCGAAGGGATGGATCATCTTGAATACTGTAAGGAATTG-ATA
1 G----AATGTTCT-GAAAATTGCT-GAAGGAATGGATCGTCTT-AATACTTTAAGGAA-CGAATG
* * * * *
1133 TTATAAAAGAACTCGTAAATGTTTGACAAGTTTGGCAGTTCATCCCAGAACAAAGAGAGAAACAA
58 TTATAAAAGAACTCGTAAA-GTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAA
*
1198 TTCTGACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATATGG
122 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATATGG
*
1263 ACCAAATTATGT
187 ACCAAATGATGT
* *
1275 GAATGTTCTGAAAATTGCATGAAGGAATGGATCGTCTTAAAACTTTAAGGAACAAATGTTATAAA
1 GAATGTTCTGAAAATTGC-TGAAGGAATGGATCGTCTTAATACTTTAAGGAACGAATGTTATAAA
* * * * *
1340 AGAAATCGTGAAAGTTTGACAAGGTCGGGAAGTTCGGCCAAGAACAAATAGACG-AACAATTCTC
65 AGAACTCGT-AAAGTTTGACAAGTTC-GGAAGTTCGTCCAAGAACCAAGAGA-GAAACAATTCTC
* * * * **
1404 ACGTAAATAAGTTTTTATTTCAATGACCAAAGGTTTTTTACAAAATGACAAACTATATGGTTCAA
127 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATATGGACCAA
*
1469 AAGATGT
192 ATGATGT
* * * *
1476 G-AT-TTCCCGAGCATGGAA-TGCTCGAA-AAATTG--C-TC-GAATACTTTAAGGAACCGAA-G
1 GAATGTT-CTGA--A---AATTGCT-GAAGGAATGGATCGTCTTAATACTTTAAGGAA-CGAATG
* ** * *
1532 TTATAAAAGAACTCGTAATAGTTTGACAAGTTCGGAAGTTCGTCCATGAACCAATTGACAAAAAA
58 TTATAAAAGAACTCGTAA-AGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAA
* * * * * *
1597 TTCTCACGTAAATAAGTTTTCAACTCAAAGACCAAAAGTTGTTTACAAAATAAGAAACAATTTGG
122 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATATGG
1662 ACCAAATGATGCGAGCAT
187 ACCAAATGAT----G--T
** * *
1680 GGAATGTTCAAAAAATTTCTTTAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAA-GTTAT
1 -GAATGTTCTGAAAATTGC-TGAAGGAATGGATCGTCTT-AATACTTTAAGGAA-CGAATGTTAT
* * * *
1744 AAAA-AATCTCATAAAAGTTTAACAAGTTCGGAAGTTCATCCAAGAACCAACAGAGAAACAATTC
62 AAAAGAA-CTCGT-AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTC
* *
1808 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTTTGAC
125 TCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA-TATGGAC
* *
1873 CAAATTATGC
189 CAAATGATGT
* * * * * *
1883 GAATGTTCTGAAAATTACTCGAAAGAATGGATCGTCTTTCATGCTTTAAGGGACCG-ATGCTATA
1 GAATGTTCTGAAAATTGCT-GAAGGAATGGATCGTC-TTAATACTTTAA-GGAACGAATGTTATA
* * * * *
1947 GAAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGCCAAGAACCAAGGGAGAAACAATTCTT
63 AAAGAACTCGT-AAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * * *
2012 GCGTAAATAACTTTTTAAATCAAAGAACAAAAGTTGTTTACAAAATGA
127 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGA
2060 ATTACTGTTT
Statistics
Matches: 991, Mismatches: 140, Indels: 148
0.77 0.11 0.12
Matches are distributed among these distances:
198 89 0.09
199 44 0.04
200 51 0.05
201 134 0.14
202 151 0.15
203 18 0.02
204 8 0.01
205 7 0.01
206 8 0.01
207 73 0.07
208 133 0.13
209 15 0.02
210 1 0.00
212 6 0.01
213 155 0.16
214 28 0.03
215 53 0.05
216 5 0.01
217 3 0.00
218 1 0.00
219 3 0.00
221 5 0.01
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (198 bp):
GAATGTTCTGAAAATTGCTGAAGGAATGGATCGTCTTAATACTTTAAGGAACGAATGTTATAAAA
GAACTCGTAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCACGT
AAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATATGGACCAAATGA
TGT
Found at i:1992 original size:202 final size:201
Alignment explanation
Indices: 654--2085 Score: 1221
Period size: 202 Copynumber: 7.0 Consensus size: 201
644 CCCGAGCATG
* * * * * * *
654 GAATGTTC-GAGAAATTACTCGAAGGAATAGACCATCTTGAATACTTTAAGGAACCAAAGTTATT
1 GAATGTTCTGA-AAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATA
* * *
718 CAAGAGCTCGTAAAAGTTTGACAAG-T------TTCATCCAAGAACCAAGAGAGAAACAATTCT-
65 AAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTC
* * *
775 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATAACAAATTAT-TTGACCAA
130 ACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATATGGACCAA
839 ATGATGTGATTTCC
195 ATGA--TG-----C
** *
853 TGAACATTAAAAGTTC-GAAAAATTGCTCGATGGAATGGATCATCTTGAATACTTTAAGGAACCG
1 -G-A-A-T----GTTCTG-AAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGAACCG
** * * * * *
917 AAGTTATTCAAGAACTCATACAAGTTTGACAGGTTCGTAAGTTAGTCCAAGAACCAAGAGAGAAT
57 AAGTTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAA-
* *
982 A-AATTCTCACGTAAATAACTTTTTAAATCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
121 ACAATTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTAT
* **
1046 TTGTTCCAAATTATGTGATTTCCTGAAC
186 ATGGACC-AA--A--TGA-----TG--C
* * * * * **
1074 AAATGTT-TAGAAAATTGCTCGAAGGGATGGATCATCTTGAATACTGTAAGGAATTGATA-TTAT
1 GAATGTTCT-GAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGAACCGA-AGTTAT
* * * * * *
1137 AAAAGAACTCGTAAATGTTTGACAAGTTTGGCAGTTCATCCCAGAACAAAGAGAGAAACAATTCT
64 AAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCT
*
1202 GACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATATGGACCA
129 CACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATATGGACCA
* *
1267 AATTATGT
194 AATGATGC
* * *
1275 GAATGTTCTGAAAATTGCAT-GAAGGAATGGATCGTCTT-AAAACTTTAAGGAA-CAAATGTTAT
1 GAATGTTCTGAAAATTGC-TCGAAAGAATGGATCGTCTTGAATACTTTAAGGAACCGAA-GTTAT
* * * * * *
1337 AAAAGAAATCGTGAAAGTTTGACAAGGTCGGGAAGTTCGGCCAAGAACAAATAGACG-AACAATT
64 AAAAGAACTCGTAAAAGTTTGACAAGTTC-GGAAGTTCGTCCAAGAACCAAGAGA-GAAACAATT
* * * * **
1401 CTCACGTAAATAAGTTTTTATTTCAATGACCAAAGGTTTTTTACAAAATGACAAACTATATGGTT
127 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATATGGAC
* *
1466 CAAAAGATGT
192 CAAATGATGC
* *
1476 G-AT-TTCCCGAGCATGGAA-TGCTCGAAA-AAT---T-G-CTCGAATACTTTAAGGAACCGAAG
1 GAATGTT-CTGA--A---AATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGAACCGAAG
* * ** * *
1532 TTATAAAAGAACTCGTAATAGTTTGACAAGTTCGGAAGTTCGTCCATGAACCAATTGACAAAAAA
60 TTATAAAAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAA
* * * * * *
1597 TTCTCACGTAAATAAGTTTTCAACTCAAAGACCAAAAGTTGTTTACAAAATAAGAAACAATTTGG
125 TTCTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATATGG
1662 ACCAAATGATGCGAGC
190 ACCAAATGAT----GC
** * ** *
1678 ATGGAATGTTCAAAAAATTTCTTTAAGGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTA
1 ---GAATGTTCTGAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTA
* * * *
1743 TAAAA-AATCTCATAAAAGTTTAACAAGTTCGGAAGTTCATCCAAGAACCAACAGAGAAACAATT
63 TAAAAGAA-CTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATT
* *
1807 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATTTTTGA
127 CTCACGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTA-TATGGA
*
1872 CCAAATTATGC
191 CCAAATGATGC
* ** * * * * *
1883 GAATGTTCTGAAAATTACTCGAAAGAATGGATCGTCTTTCATGCTTTAAGGGACCGATGCTATAG
1 GAATGTTCTGAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA
* * * **
1948 AAGAACTCGTAAAAGTTTGACAAGTTCGAAAGTTCGGCCAAGAACCAAGGGAGAAACAATTCTTG
66 AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
* * * * * * *
2013 CGTAAATAACTTTTTAAATCAAAGAACAAAAGTTGTTTACAAAATGA-ATTACTGTTTGGACAAA
131 CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACA-AACTATATGGACCAA
2077 ATGATGC
195 ATGATGC
2084 GA
1 GA
2086 TTTCTCGAGC
Statistics
Matches: 1009, Mismatches: 157, Indels: 131
0.78 0.12 0.10
Matches are distributed among these distances:
198 90 0.09
199 47 0.05
200 50 0.05
201 145 0.14
202 163 0.16
203 12 0.01
204 7 0.01
205 5 0.00
206 5 0.00
207 79 0.08
208 135 0.13
209 13 0.01
210 1 0.00
212 3 0.00
213 157 0.16
214 29 0.03
215 53 0.05
216 3 0.00
217 3 0.00
218 1 0.00
219 2 0.00
221 4 0.00
224 2 0.00
ACGTcount: A:0.40, C:0.15, G:0.17, T:0.28
Consensus pattern (201 bp):
GAATGTTCTGAAAATTGCTCGAAAGAATGGATCGTCTTGAATACTTTAAGGAACCGAAGTTATAA
AAGAACTCGTAAAAGTTTGACAAGTTCGGAAGTTCGTCCAAGAACCAAGAGAGAAACAATTCTCA
CGTAAATAAGTTTTTAATTCAAAGACCAAAAGTTGTTTACAAAATGACAAACTATATGGACCAAA
TGATGC
Done.