Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000215.1 Kokia drynarioides strain JFW-HI SEQ_110919, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4994
ACGTcount: A:0.37, C:0.13, G:0.15, T:0.35


Found at i:3322 original size:18 final size:19

Alignment explanation


    Indices: 3299--3336  Score: 60
    Period size: 19  Copynumber: 2.1  Consensus size: 19

       3289 TATTTTTATT

                      *        
       3299 AATTT-AAAATTTTAAAAA
          1 AATTTAAAAAGTTTAAAAA

                               
       3317 AATTTAAAAAGTTTAAAAA
          1 AATTTAAAAAGTTTAAAAA

             
       3336 A
          1 A

       3337 TAATTTTTTA


Statistics
Matches: 18,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  18    5  0.28
  19   13  0.72

ACGTcount: A:0.63, C:0.00, G:0.03, T:0.34


Consensus pattern (19 bp):   
AATTTAAAAAGTTTAAAAA

Found at i:4926 original size:25 final size:25

Alignment explanation


    Indices: 4898--4948  Score: 93
    Period size: 25  Copynumber: 2.0  Consensus size: 25

       4888 TAATCGAAAC

                                     
       4898 AAACTTAAAAATCTAATAAATATAA
          1 AAACTTAAAAATCTAATAAATATAA

                               *     
       4923 AAACTTAAAAATCTAATAATTATAA
          1 AAACTTAAAAATCTAATAAATATAA

             
       4948 A
          1 A

       4949 CATAAATTTT


Statistics
Matches: 25,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  25   25  1.00

ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29


Consensus pattern (25 bp):   
AAACTTAAAAATCTAATAAATATAA
Done.