genome.fa.s2152.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01002152.1 Kokia drynarioides strain JFW-HI SEQ_114101, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98006

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1001--1166	55	3.0	55	79	4	172	48	12	9	30	1.72
2293--2340	25	2.0	24	84	12	62	35	6	6	52	1.52
9728--9859	66	2.0	66	95	0	237	25	31	3	39	1.73
20064--20132	31	2.2	31	81	0	84	40	10	13	36	1.78
22086--22527	52	8.5	52	88	1	634	38	23	13	25	1.91
28953--29197	125	2.0	125	100	0	490	41	13	10	35	1.78
31020--31124	53	2.0	52	88	5	158	20	0	18	60	1.41
31048--31124	6	13.2	6	76	10	70	20	0	16	62	1.33
30998--31125	53	2.6	47	77	12	116	21	1	18	58	1.47
31590--31624	10	3.4	10	88	7	52	74	0	2	22	0.95
33139--33170	9	3.6	9	100	0	64	37	31	0	31	1.58
34802--34852	23	2.2	23	89	6	77	29	1	25	43	1.66
35093--35245	44	3.5	43	87	3	209	22	14	22	40	1.90
35093--35260	87	1.9	87	85	4	232	23	14	22	39	1.91
35093--35297	44	4.7	44	81	6	184	24	16	20	39	1.92
35107--35297	88	2.2	87	82	6	226	23	16	21	38	1.93
41703--41771	28	2.5	28	100	0	138	30	30	15	23	1.96
44050--44135	43	2.0	43	90	0	136	30	12	22	34	1.91
49926--49957	6	5.3	6	100	0	64	15	53	0	31	1.43
51223--51247	5	5.0	5	100	0	50	0	40	0	60	0.97
52830--53000	60	2.9	57	77	7	171	49	11	14	25	1.76
53137--53187	20	2.6	19	73	14	50	29	1	1	66	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60472--60508	19	1.9	19	88	0	56	45	2	2	48	1.30
61030--61092	25	2.5	25	84	7	74	39	3	1	55	1.25
64941--65040	29	3.5	27	78	16	105	39	5	26	30	1.77
64959--65248	29	9.8	29	70	15	141	38	2	26	32	1.71
64961--65279	59	5.4	59	80	9	278	38	2	25	33	1.70
65228--65337	30	3.7	28	82	10	103	42	0	18	38	1.56
65074--65337	59	4.4	57	79	9	210	40	1	22	34	1.63
67591--68151	193	2.9	193	90	3	830	23	22	17	36	1.95
80125--80198	29	2.6	29	75	16	80	43	0	29	27	1.55
80103--80281	30	6.1	29	72	17	120	38	3	27	30	1.75
80155--80439	59	4.9	58	80	7	299	38	4	25	31	1.75
80160--80439	116	2.4	116	83	7	343	38	4	25	32	1.75
80160--80445	29	9.8	29	69	18	139	38	4	24	32	1.75
80123--80440	59	5.4	58	78	8	288	38	4	25	31	1.75
80393--80480	30	3.0	29	81	8	79	39	3	26	30	1.72
81590--81625	3	12.0	3	100	0	72	33	0	0	66	0.92
87294--87328	14	2.4	15	95	4	63	77	0	22	0	0.78
87280--87328	20	2.5	19	90	3	71	77	0	22	0	0.77
88492--88541	21	2.4	21	89	0	82	12	20	30	38	1.88
88505--88551	21	2.2	21	84	0	58	12	27	27	31	1.93
89226--89271	22	2.1	22	83	0	56	60	19	8	10	1.55
89307--89346	12	3.3	12	80	13	55	72	17	2	7	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90819--91170	52	6.8	52	82	4	424	33	23	13	29	1.93
90819--91167	102	3.3	103	85	4	418	33	23	13	29	1.93
93752--93830	31	2.5	32	71	17	76	53	15	6	25	1.65
95829--95901	37	2.0	37	97	0	137	39	28	16	15	1.89
95832--95912	37	2.2	37	91	4	128	40	28	17	13	1.87
96807--96849	19	2.3	19	83	0	50	46	6	2	44	1.43

Tables:   1

The End!