Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002157.1 Kokia drynarioides strain JFW-HI SEQ_114109, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 846

Length: 1410
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37


Found at i:147 original size:16 final size:16

Alignment explanation


    Indices: 126--166  Score: 66
    Period size: 16  Copynumber: 2.6  Consensus size: 16

        116 GTATTACTCC

                            
        126 GAATAAATTTTTTAAA
          1 GAATAAATTTTTTAAA

                     *      
        142 GAATAAATTGTTTAAA
          1 GAATAAATTTTTTAAA

                      
        158 GAA-AAATTT
          1 GAATAAATTT

        167 AAAAGTTAAA


Statistics
Matches: 23,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  15    5  0.22
  16   18  0.78

ACGTcount: A:0.51, C:0.00, G:0.10, T:0.39


Consensus pattern (16 bp):   
GAATAAATTTTTTAAA
Done.