Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002158.1 Kokia drynarioides strain JFW-HI SEQ_114110, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7368
ACGTcount: A:0.33, C:0.13, G:0.14, T:0.40


Found at i:6767 original size:18 final size:17

Alignment explanation


    Indices: 6732--6770  Score: 51
    Period size: 18  Copynumber: 2.2  Consensus size: 17

       6722 CATTGAGTAC

                        **   
       6732 TTTTTTTTTTAATGTTA
          1 TTTTTTTTTTAAAATTA

                              
       6749 TTTTATTTTTTAAAATTA
          1 TTTT-TTTTTTAAAATTA

                
       6767 TTTT
          1 TTTT

       6771 GTTAATTTTG


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  17    4  0.21
  18   15  0.79

ACGTcount: A:0.23, C:0.00, G:0.03, T:0.74


Consensus pattern (17 bp):   
TTTTTTTTTTAAAATTA
Done.