Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002164.1 Kokia drynarioides strain JFW-HI SEQ_114118, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 859

Length: 1432
ACGTcount: A:0.30, C:0.22, G:0.14, T:0.34


Found at i:977 original size:20 final size:20

Alignment explanation


    Indices: 949--992  Score: 70
    Period size: 20  Copynumber: 2.2  Consensus size: 20

        939 ATTCTCGAAG

                *               
        949 AATTTATTTCTTCAACTCAA
          1 AATTGATTTCTTCAACTCAA

                               *
        969 AATTGATTTCTTCAACTCAG
          1 AATTGATTTCTTCAACTCAA

                
        989 AATT
          1 AATT

        993 AGTTGGAGCA


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  20   22  1.00

ACGTcount: A:0.34, C:0.18, G:0.05, T:0.43


Consensus pattern (20 bp):   
AATTGATTTCTTCAACTCAA
Done.