Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002170.1 Kokia drynarioides strain JFW-HI SEQ_114128, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5491
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26


Found at i:589 original size:10 final size:10

Alignment explanation


    Indices: 574--602  Score: 58
    Period size: 10  Copynumber: 2.9  Consensus size: 10

        564 TTCTTTAATA

                      
        574 CATACATACT
          1 CATACATACT

                      
        584 CATACATACT
          1 CATACATACT

                     
        594 CATACATAC
          1 CATACATAC

        603 CACATAATCA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   19  1.00

ACGTcount: A:0.41, C:0.31, G:0.00, T:0.28


Consensus pattern (10 bp):   
CATACATACT
Done.