Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002171.1 Kokia drynarioides strain JFW-HI SEQ_114134, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10526
ACGTcount: A:0.30, C:0.18, G:0.17, T:0.35


Found at i:1474 original size:20 final size:20

Alignment explanation


    Indices: 1444--1484  Score: 66
    Period size: 20  Copynumber: 2.0  Consensus size: 20

       1434 TCCCAAGGTG

                                 
       1444 TGTTCTCTGCTTCTTGTTTCT
          1 TGTTCTCTGCTTCTT-TTTCT

                                
       1465 TGTT-TCTGCTTCTTTTTCT
          1 TGTTCTCTGCTTCTTTTTCT

             
       1484 T
          1 T

       1485 CTTATTGCTT


Statistics
Matches: 20,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  19    6  0.30
  20   10  0.50
  21    4  0.20

ACGTcount: A:0.00, C:0.22, G:0.12, T:0.66


Consensus pattern (20 bp):   
TGTTCTCTGCTTCTTTTTCT

Done.