Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002179.1 Kokia drynarioides strain JFW-HI SEQ_114145, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6283
ACGTcount: A:0.36, C:0.14, G:0.13, T:0.37


Found at i:2841 original size:22 final size:22

Alignment explanation


    Indices: 2816--2860  Score: 56
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       2806 TAATATTAAC

                      *            
       2816 AATTAAATTTGAAA-AGTAAAAA
          1 AATTAAATTTCAAACA-TAAAAA

                *                 
       2838 AATTGAATTTCAAACATAAAAA
          1 AATTAAATTTCAAACATAAAAA

             
       2860 A
          1 A

       2861 TATATAATAA


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  22   19  0.95
  23    1  0.05

ACGTcount: A:0.62, C:0.04, G:0.07, T:0.27


Consensus pattern (22 bp):   
AATTAAATTTCAAACATAAAAA
Done.