Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002183.1 Kokia drynarioides strain JFW-HI SEQ_114152, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 767

Length: 1279
ACGTcount: A:0.27, C:0.21, G:0.18, T:0.34


Found at i:693 original size:10 final size:10

Alignment explanation


    Indices: 678--706  Score: 58
    Period size: 10  Copynumber: 2.9  Consensus size: 10

        668 TGATTATGTG

                      
        678 GTATGTATGA
          1 GTATGTATGA

                      
        688 GTATGTATGA
          1 GTATGTATGA

                     
        698 GTATGTATG
          1 GTATGTATG

        707 TATTAAAGAA


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  10   19  1.00

ACGTcount: A:0.28, C:0.00, G:0.31, T:0.41


Consensus pattern (10 bp):   
GTATGTATGA
Done.