Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002184.1 Kokia drynarioides strain JFW-HI SEQ_114154, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3604
ACGTcount: A:0.36, C:0.13, G:0.14, T:0.37


Found at i:1395 original size:35 final size:35

Alignment explanation


    Indices: 1284--1396  Score: 106
    Period size: 35  Copynumber: 3.2  Consensus size: 35

       1274 GATTTCCAAG

                   *               *              
       1284 AATAAAAGGAATAAACTGAAGACTTATAA-TTTCCATT
          1 AATAAAACGAA-AAA-TGAAGACATA-AATTTTCCATT

                            *    *              *
       1321 AATAAAAC-AAAAATCAAAGAAATAAAATTTT-CATG
          1 AATAAAACGAAAAAT-GAAGACAT-AAATTTTCCATT

                                 *             
       1356 AATAAAACGAAAAATGAAGACCTAAATTTTCCATT
          1 AATAAAACGAAAAATGAAGACATAAATTTTCCATT

                  
       1391 AATAAA
          1 AATAAA

       1397 GCCAAGTCAA


Statistics
Matches: 62,  Mismatches: 9, Indels: 12
        0.75            0.11        0.14

Matches are distributed among these distances:
  34    8  0.13
  35   35  0.56
  36   12  0.19
  37    7  0.11

ACGTcount: A:0.56, C:0.11, G:0.08, T:0.26


Consensus pattern (35 bp):   
AATAAAACGAAAAATGAAGACATAAATTTTCCATT

Found at i:2767 original size:131 final size:131

Alignment explanation


    Indices: 2533--2797  Score: 503
    Period size: 131  Copynumber: 2.0  Consensus size: 131

       2523 TCTAAAAAAT

                                                                             
       2533 ATTAAATTTTCAAGAATTAAAATTGTGTACATATACATTTGCTATCAAATGTCAAAGGTTTAAGA
          1 ATTAAATTTTCAAGAATTAAAATTGTGTACATATACATTTGCTATCAAATGTCAAAGGTTTAAGA

                              *                      *                       
       2598 TTCCCAAACCCAGTGTGACCACCACAAATTAGTGCATAGAAGATTTTTTCCTCCCACAAAACTAA
         66 TTCCCAAACCCAGTGTGAACACCACAAATTAGTGCATAGAAAATTTTTTCCTCCCACAAAACTAA

             
       2663 A
        131 A

                                                              *              
       2664 ATTAAATTTTCAAGAATTAAAATTGTGTACATATACATTTGCTATCAAATTTCAAAGGTTTAAGA
          1 ATTAAATTTTCAAGAATTAAAATTGTGTACATATACATTTGCTATCAAATGTCAAAGGTTTAAGA

                                                                             
       2729 TTCCCAAACCCAGTGTGAACACCACAAATTAGTGCATAGAAAATTTTTTCCTCCCACAAAACTAA
         66 TTCCCAAACCCAGTGTGAACACCACAAATTAGTGCATAGAAAATTTTTTCCTCCCACAAAACTAA

             
       2794 A
        131 A

               
       2795 ATT
          1 ATT

       2798 TTCTACACGA


Statistics
Matches: 131,  Mismatches: 3, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
 131  131  1.00

ACGTcount: A:0.40, C:0.18, G:0.11, T:0.31


Consensus pattern (131 bp):   
ATTAAATTTTCAAGAATTAAAATTGTGTACATATACATTTGCTATCAAATGTCAAAGGTTTAAGA
TTCCCAAACCCAGTGTGAACACCACAAATTAGTGCATAGAAAATTTTTTCCTCCCACAAAACTAA
A
Done.