genome.fa.s2190.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01002190.1 Kokia drynarioides strain JFW-HI SEQ_114163, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  188926

Tables:   1   

This is table  1  of  1  ( 85 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302--332	16	1.9	16	93	0	53	58	9	3	29	1.46
12723--12771	19	2.5	19	87	9	64	22	12	2	63	1.39
15806--15875	20	3.5	20	71	7	54	27	8	17	47	1.76
33590--33640	20	2.5	20	81	9	59	31	9	19	39	1.84
34729--35061	157	2.1	157	79	10	353	38	1	34	24	1.65
41009--41064	18	3.0	18	76	10	51	55	12	12	19	1.68
43308--43339	16	1.9	17	93	6	57	75	0	12	12	1.06
43307--43345	16	2.3	17	82	8	53	74	2	10	12	1.17
54384--54678	71	4.2	71	84	1	387	28	23	15	33	1.95
55182--55244	24	2.6	24	87	0	99	22	20	15	41	1.90
55155--55258	24	4.3	24	77	0	82	22	26	16	34	1.95
57993--58048	15	3.4	15	70	29	51	37	0	8	53	1.32
59879--59919	19	2.2	19	86	8	57	39	2	2	56	1.26
62673--62712	20	2.0	20	85	4	55	60	5	15	20	1.53
64435--64495	30	2.0	30	100	0	122	52	14	9	22	1.71
66714--66752	21	1.9	21	89	5	62	66	7	12	12	1.43
69899--70100	102	2.0	102	97	0	377	29	25	18	26	1.98
73272--73311	19	2.1	19	85	4	53	62	5	15	17	1.49
77838--77876	19	2.1	19	86	13	55	38	2	2	56	1.27
79155--79226	26	2.8	26	80	4	83	26	23	23	26	2.00
79733--79785	3	17.7	3	100	0	106	33	0	0	66	0.92
80280--80374	47	2.0	47	95	0	172	30	29	10	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
80379--80412	17	2.0	17	94	0	59	52	14	17	14	1.74
81747--81796	20	2.3	20	80	10	55	56	12	6	26	1.58
83173--83227	10	5.2	10	77	12	56	69	1	7	21	1.23
83720--84224	151	3.4	147	80	9	519	43	9	3	43	1.54
84636--84684	3	16.3	3	100	0	98	65	0	0	34	0.93
85086--85145	20	3.3	19	68	22	56	51	10	3	35	1.52
85076--85145	35	2.0	35	97	0	131	50	11	4	34	1.58
85237--85292	22	2.5	22	79	0	67	14	28	32	25	1.94
85679--85753	38	2.0	38	91	0	123	28	21	22	28	1.99
87047--87073	5	5.4	5	100	0	54	18	0	0	81	0.69
90325--90374	25	2.0	26	84	4	66	20	14	26	40	1.90
92235--92300	4	16.8	4	83	9	64	21	27	4	46	1.70
95520--95595	34	2.3	33	81	4	91	72	1	19	6	1.14
96148--96172	7	3.6	7	100	0	50	76	0	24	0	0.80
96141--96193	14	3.7	14	80	12	54	81	0	16	1	0.79
96144--96195	26	2.0	25	85	10	70	78	0	19	1	0.84
96564--97044	42	11.5	42	88	0	656	21	18	23	35	1.95
97413--97455	3	14.3	3	95	0	77	34	2	0	62	1.08
98139--98181	19	2.2	20	84	12	54	44	2	4	48	1.36
97888--98252	150	2.4	154	83	8	432	46	3	8	41	1.52
103853--104042	92	2.1	92	94	0	335	46	5	11	36	1.63
104054--104176	61	2.0	61	98	0	237	32	18	21	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105073--105110	11	3.5	11	82	10	51	71	0	0	28	0.87
105074--105115	21	2.0	21	86	9	59	64	2	0	33	1.07
107997--108034	15	2.4	16	83	16	53	44	0	5	50	1.24
108703--108829	63	2.0	63	98	0	245	23	25	22	28	1.99
109768--109809	18	2.3	18	87	0	57	21	21	35	21	1.96
110370--110534	4	40.5	4	79	6	170	70	4	0	24	1.11
110370--110534	21	7.9	21	82	9	196	70	4	0	24	1.11
110653--110733	29	2.7	30	71	1	74	40	13	7	38	1.73
117475--117618	72	2.0	72	97	0	270	36	9	12	41	1.76
119396--119428	16	2.1	16	88	5	50	27	6	15	51	1.66
121815--121885	27	2.6	27	77	4	72	39	23	12	23	1.89
121862--121918	27	2.1	28	83	3	71	29	22	22	24	1.99
126658--126722	28	2.3	28	81	5	69	44	27	9	18	1.80
129692--129733	10	4.1	10	87	3	57	40	2	0	57	1.12
130773--130805	17	2.0	17	88	5	50	24	3	21	51	1.62
131640--131667	12	2.3	12	100	0	56	17	17	14	50	1.79
138219--138288	23	3.0	23	81	4	70	24	11	17	47	1.80
141233--141343	26	4.4	24	76	8	105	27	32	18	20	1.97
141263--141357	26	3.8	24	79	9	93	30	32	16	20	1.95
142702--142735	17	2.0	17	88	0	50	38	14	0	47	1.45
145330--145364	10	3.4	10	84	7	52	20	0	0	80	0.72
145332--145383	21	2.6	21	84	6	63	19	3	1	75	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145342--145380	16	2.5	15	87	4	51	20	5	2	71	1.17
151913--152331	195	2.1	195	82	6	492	26	25	18	29	1.98
155178--155224	24	1.9	24	82	4	58	10	6	19	63	1.47
156489--156569	6	14.2	6	75	14	82	45	1	1	51	1.16
156487--156573	17	5.1	17	77	10	72	47	1	1	50	1.16
163482--164260	209	3.8	209	83	2	912	36	19	21	22	1.95
164842--164898	17	3.4	17	90	4	89	42	0	3	54	1.17
164856--164941	6	15.0	6	74	13	83	44	1	2	52	1.21
164866--164941	23	3.3	23	87	7	109	44	1	2	51	1.23
164888--164920	17	1.9	17	100	0	66	42	0	3	54	1.15
165564--165641	3	26.0	3	89	0	66	64	10	1	24	1.33
166778--166954	29	6.1	29	72	15	132	32	21	2	42	1.67
166746--167014	59	4.7	57	82	9	289	31	23	4	40	1.76
171182--171388	105	2.0	105	94	0	360	35	26	22	15	1.94
178448--178486	18	2.2	18	85	0	51	51	0	12	35	1.40
179325--179366	12	3.6	12	77	6	50	23	14	21	40	1.90
179320--179371	23	2.2	23	86	3	77	28	11	17	42	1.84
179320--179381	23	2.7	23	80	7	63	32	9	17	40	1.82
182697--182761	6	10.8	6	91	0	94	18	46	0	35	1.50

Tables:   1

The End!