Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002191.1 Kokia drynarioides strain JFW-HI SEQ_114165, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11730
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35


Found at i:2572 original size:22 final size:21

Alignment explanation


    Indices: 2547--2588  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       2537 CATATTACTA

                                  
       2547 AATTAACTTTAAAAATAATTAT
          1 AATTAACTTT-AAAATAATTAT

                *      *        
       2569 AATTTACTTTAGAATAATTA
          1 AATTAACTTTAAAATAATTA

       2589 GTTAAAAAAA


Statistics
Matches: 18,  Mismatches: 2, Indels: 1
        0.86            0.10        0.05

Matches are distributed among these distances:
  21    9  0.50
  22    9  0.50

ACGTcount: A:0.50, C:0.05, G:0.02, T:0.43


Consensus pattern (21 bp):   
AATTAACTTTAAAATAATTAT

Found at i:2684 original size:6 final size:6

Alignment explanation


    Indices: 2677--2714  Score: 51
    Period size: 6  Copynumber: 6.3  Consensus size: 6

       2667 TGATATTTAT

                 *                                       
       2677 AATTAT AATTAC AATTAC AATTAC AATTTA- AATTAC AA
          1 AATTAC AATTAC AATTAC AATTAC AA-TTAC AATTAC AA

       2715 CTATTAATTT


Statistics
Matches: 29,  Mismatches: 1, Indels: 4
        0.85            0.03        0.12

Matches are distributed among these distances:
   5    3  0.10
   6   23  0.79
   7    3  0.10

ACGTcount: A:0.53, C:0.11, G:0.00, T:0.37


Consensus pattern (6 bp):   
AATTAC
Done.