Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002192.1 Kokia drynarioides strain JFW-HI SEQ_114170, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4007
ACGTcount: A:0.34, C:0.17, G:0.13, T:0.36


Found at i:64 original size:22 final size:23

Alignment explanation


    Indices: 38--80  Score: 70
    Period size: 22  Copynumber: 1.9  Consensus size: 23

         28 ACTAATAAAT

                        *          
         38 GGAGAGCACAA-GCGTGCTAATC
          1 GGAGAGCACAATACGTGCTAATC

                                 
         60 GGAGAGCACAATACGTGCTAA
          1 GGAGAGCACAATACGTGCTAA

         81 ATAAATGGAG


Statistics
Matches: 19,  Mismatches: 1, Indels: 1
        0.90            0.05        0.05

Matches are distributed among these distances:
  22   11  0.58
  23    8  0.42

ACGTcount: A:0.35, C:0.21, G:0.30, T:0.14


Consensus pattern (23 bp):   
GGAGAGCACAATACGTGCTAATC

Found at i:1923 original size:30 final size:30

Alignment explanation


    Indices: 1887--1948  Score: 115
    Period size: 30  Copynumber: 2.1  Consensus size: 30

       1877 ATTCTTGATC

                                          
       1887 AGGTACAATCTTTGCCCCTGCGGTGCATTT
          1 AGGTACAATCTTTGCCCCTGCGGTGCATTT

                                     *    
       1917 AGGTACAATCTTTGCCCCTGCGGTGTATTT
          1 AGGTACAATCTTTGCCCCTGCGGTGCATTT

              
       1947 AG
          1 AG

       1949 TGAAATTAGC


Statistics
Matches: 31,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  30   31  1.00

ACGTcount: A:0.18, C:0.24, G:0.24, T:0.34


Consensus pattern (30 bp):   
AGGTACAATCTTTGCCCCTGCGGTGCATTT
Done.