genome.fa.s2197.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01002197.1 Kokia drynarioides strain JFW-HI SEQ_114177, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46434

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
187--253	4	16.2	4	81	6	71	0	34	0	65	0.93
225--252	13	2.2	13	100	0	56	0	21	0	78	0.75
8901--8992	34	2.7	34	91	3	141	36	1	3	58	1.21
8901--8992	17	5.4	17	84	2	123	36	1	3	58	1.21
10657--10713	30	1.9	30	85	0	78	40	21	1	36	1.63
10668--10778	29	3.9	28	78	16	104	39	23	0	36	1.61
10829--10903	29	2.6	28	85	6	96	41	28	1	29	1.64
10919--11055	29	4.7	29	83	1	150	32	24	9	34	1.87
10919--11113	58	3.4	58	80	4	153	32	23	9	34	1.87
10829--11221	29	13.6	30	68	18	95	34	24	7	33	1.84
16422--16475	10	5.1	10	84	8	54	83	0	7	9	0.82
16438--16472	18	1.9	18	88	0	52	82	0	2	14	0.77
17426--17776	50	7.0	50	82	6	397	35	17	31	16	1.92
18497--18580	37	2.2	38	87	6	118	33	15	23	27	1.95
18529--19841	209	6.3	208	83	3	1404	37	17	21	23	1.94
18528--19841	418	3.1	417	83	1	1630	36	17	21	23	1.94
19362--19433	37	1.9	37	85	0	99	34	19	25	20	1.96
18529--19891	627	2.2	627	82	2	1664	37	17	22	23	1.94
19735--19918	85	2.2	85	91	0	296	34	16	23	25	1.95
19865--19936	37	1.9	37	88	0	108	33	15	25	26	1.95
20460--20551	34	2.7	34	88	3	132	36	4	4	54	1.40
20460--20560	17	5.9	17	77	2	105	38	3	3	53	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
22205--22408	30	7.0	30	75	9	127	35	25	2	35	1.71
22362--22494	29	4.6	30	79	5	114	34	29	6	29	1.83
22362--22468	29	3.7	29	82	5	119	36	27	6	29	1.82
22362--22570	29	7.3	29	71	7	108	33	29	7	30	1.84
22491--22579	28	3.2	28	68	17	69	29	25	7	37	1.84
23906--23966	29	2.1	30	84	9	81	31	0	3	65	1.09
25938--26041	55	1.9	55	88	4	156	24	8	17	50	1.74
29664--29688	2	12.5	2	100	0	50	52	0	0	48	1.00
30931--30955	4	6.2	4	100	0	50	76	0	24	0	0.80
37978--38037	17	3.5	17	79	6	68	41	0	5	53	1.23
38745--38778	3	11.3	3	93	0	59	64	0	0	35	0.94
45270--45816	49	11.2	49	74	10	411	39	19	24	17	1.92
45287--45816	98	5.4	98	88	1	740	39	19	24	16	1.92
46228--46301	17	4.4	17	87	0	76	44	1	2	51	1.24
46222--46301	34	2.4	34	84	0	97	43	1	3	51	1.27

Tables:   1

The End!