Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002198.1 Kokia drynarioides strain JFW-HI SEQ_114178, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 889

Length: 1483
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.38


Found at i:289 original size:15 final size:15

Alignment explanation


    Indices: 269--314  Score: 58
    Period size: 15  Copynumber: 3.1  Consensus size: 15

        259 TATTATTATA

                           
        269 AAATTATAAAAAATT
          1 AAATTATAAAAAATT

                    **     
        284 AAATTATACCAAATT
          1 AAATTATAAAAAATT

               *           
        299 AAAATAT-AAAAATT
          1 AAATTATAAAAAATT

              
        313 AA
          1 AA

        315 TCCCATATTT


Statistics
Matches: 26,  Mismatches: 5, Indels: 1
        0.81            0.16        0.03

Matches are distributed among these distances:
  14    7  0.27
  15   19  0.73

ACGTcount: A:0.65, C:0.04, G:0.00, T:0.30


Consensus pattern (15 bp):   
AAATTATAAAAAATT

Done.