Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002209.1 Kokia drynarioides strain JFW-HI SEQ_114198, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2211
ACGTcount: A:0.29, C:0.18, G:0.18, T:0.34


Found at i:395 original size:33 final size:34

Alignment explanation


    Indices: 329--397  Score: 95
    Period size: 33  Copynumber: 2.1  Consensus size: 34

        319 CTTATTGGTT

                           * *          *     
        329 TTACTTTTCAATATTCTTTTTTTAAAACTGGATC
          1 TTACTTTTCAATATTATATTTTTAAAACAGGATC

                                   *          
        363 TTACTTTTCAATA-TATATTTTTCAAACAGGATC
          1 TTACTTTTCAATATTATATTTTTAAAACAGGATC

              
        396 TT
          1 TT

        398 TCGATTTTCT


Statistics
Matches: 31,  Mismatches: 4, Indels: 1
        0.86            0.11        0.03

Matches are distributed among these distances:
  33   18  0.58
  34   13  0.42

ACGTcount: A:0.29, C:0.14, G:0.06, T:0.51


Consensus pattern (34 bp):   
TTACTTTTCAATATTATATTTTTAAAACAGGATC
Done.