Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002212.1 Kokia drynarioides strain JFW-HI SEQ_114203, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11386
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34


Found at i:3435 original size:27 final size:27

Alignment explanation


    Indices: 3399--3454  Score: 103
    Period size: 27  Copynumber: 2.1  Consensus size: 27

       3389 TGAAATTGTT

                        *              
       3399 AAAGTTCTTTAGTTCAGAGATGGAATA
          1 AAAGTTCTTTAGCTCAGAGATGGAATA

                                       
       3426 AAAGTTCTTTAGCTCAGAGATGGAATA
          1 AAAGTTCTTTAGCTCAGAGATGGAATA

              
       3453 AA
          1 AA

       3455 CTCTCGAGGA


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.39, C:0.09, G:0.21, T:0.30


Consensus pattern (27 bp):   
AAAGTTCTTTAGCTCAGAGATGGAATA
Done.