Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002219.1 Kokia drynarioides strain JFW-HI SEQ_114210, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 723

Length: 1205
ACGTcount: A:0.39, C:0.15, G:0.13, T:0.33


Found at i:65 original size:12 final size:12

Alignment explanation


    Indices: 50--84  Score: 52
    Period size: 12  Copynumber: 2.9  Consensus size: 12

         40 GACTTTTCGT

                     *  
         50 TTTTATTTTCTA
          1 TTTTATTTTATA

                       *
         62 TTTTATTTTATC
          1 TTTTATTTTATA

                       
         74 TTTTATTTTAT
          1 TTTTATTTTAT

         85 TACCTAAAAT


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  12   21  1.00

ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77


Consensus pattern (12 bp):   
TTTTATTTTATA

Found at i:72 original size:17 final size:17

Alignment explanation


    Indices: 50--85  Score: 56
    Period size: 17  Copynumber: 2.1  Consensus size: 17

         40 GACTTTTCGT

                              
         50 TTTTAT-TTTCTATTTTA
          1 TTTTATCTTT-TATTTTA

                             
         67 TTTTATCTTTTATTTTA
          1 TTTTATCTTTTATTTTA

              
         84 TT
          1 TT

         86 ACCTAAAATG


Statistics
Matches: 18,  Mismatches: 0, Indels: 2
        0.90            0.00        0.10

Matches are distributed among these distances:
  17   15  0.83
  18    3  0.17

ACGTcount: A:0.17, C:0.06, G:0.00, T:0.78


Consensus pattern (17 bp):   
TTTTATCTTTTATTTTA
Done.