Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002227.1 Kokia drynarioides strain JFW-HI SEQ_114225, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5256
ACGTcount: A:0.35, C:0.16, G:0.12, T:0.37


Found at i:386 original size:21 final size:21

Alignment explanation


    Indices: 352--392  Score: 57
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        342 TTATATATGT

                          *      
        352 TTAATTAAGCTTTAGTTAATC
          1 TTAATTAAGCTTTAATTAATC

                                 
        373 TTAATTAA-CTTTTAATTAAT
          1 TTAATTAAGC-TTTAATTAAT

        393 ATTTTCTTAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 2
        0.86            0.05        0.10

Matches are distributed among these distances:
  20    1  0.06
  21   17  0.94

ACGTcount: A:0.37, C:0.07, G:0.05, T:0.51


Consensus pattern (21 bp):   
TTAATTAAGCTTTAATTAATC

Found at i:3327 original size:21 final size:21

Alignment explanation


    Indices: 3293--3336  Score: 54
    Period size: 21  Copynumber: 2.1  Consensus size: 21

       3283 TTAATTAAGT

                          **     
       3293 TTAATTAAGCTTTAGTTAATC
          1 TTAATTAAGCTTTAAATAATC

                                  
       3314 TTAATTAA-CTTTTAAATAATC
          1 TTAATTAAGC-TTTAAATAATC

              
       3335 TT
          1 TT

       3337 TTCTTATAAT


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  20    1  0.05
  21   19  0.95

ACGTcount: A:0.36, C:0.09, G:0.05, T:0.50


Consensus pattern (21 bp):   
TTAATTAAGCTTTAAATAATC
Done.