Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002228.1 Kokia drynarioides strain JFW-HI SEQ_114226, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3518
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.37


Found at i:376 original size:21 final size:21

Alignment explanation


    Indices: 352--395  Score: 54
    Period size: 21  Copynumber: 2.1  Consensus size: 21

        342 TTATATATGT

                           *      
        352 TTAATTAAGC-TTTAGTTAATC
          1 TTAATTAA-CTTTTAATTAATC

                  *              
        373 TTAATTGACTTTTAATTAATC
          1 TTAATTAACTTTTAATTAATC

              
        394 TT
          1 TT

        396 TTCTTATAAT


Statistics
Matches: 20,  Mismatches: 2, Indels: 2
        0.83            0.08        0.08

Matches are distributed among these distances:
  20    1  0.05
  21   19  0.95

ACGTcount: A:0.32, C:0.09, G:0.07, T:0.52


Consensus pattern (21 bp):   
TTAATTAACTTTTAATTAATC
Done.