Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002230.1 Kokia drynarioides strain JFW-HI SEQ_114229, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6243
ACGTcount: A:0.34, C:0.15, G:0.15, T:0.35


Found at i:5619 original size:21 final size:21

Alignment explanation


    Indices: 5601--5642  Score: 66
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       5591 CAATATTTTT

                                 
       5601 GTCAAAAGAACAACAATTTAA
          1 GTCAAAAGAACAACAATTTAA

                 *   *           
       5622 GTCAACAGAGCAACAATTTAA
          1 GTCAAAAGAACAACAATTTAA

       5643 CTTTTTTTGA


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.52, C:0.17, G:0.12, T:0.19


Consensus pattern (21 bp):   
GTCAAAAGAACAACAATTTAA
Done.