Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002231.1 Kokia drynarioides strain JFW-HI SEQ_114230, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6342
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35


Found at i:390 original size:21 final size:21

Alignment explanation


    Indices: 364--405  Score: 66
    Period size: 21  Copynumber: 2.0  Consensus size: 21

        354 TCAAAAAAAG

                                 
        364 TTAAATTGTTGCTCTGTTGAC
          1 TTAAATTGTTGCTCTGTTGAC

                       *   *     
        385 TTAAATTGTTGTTCTTTTGAC
          1 TTAAATTGTTGCTCTGTTGAC

        406 AAAAATATTG


Statistics
Matches: 19,  Mismatches: 2, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.19, C:0.12, G:0.17, T:0.52


Consensus pattern (21 bp):   
TTAAATTGTTGCTCTGTTGAC

Found at i:411 original size:21 final size:21

Alignment explanation


    Indices: 366--411  Score: 56
    Period size: 21  Copynumber: 2.2  Consensus size: 21

        356 AAAAAAAGTT

                               **
        366 AAATTGTTGCTCTGTTGACTT
          1 AAATTGTTGCTCTGTTGACAA

                     *   *       
        387 AAATTGTTGTTCTTTTGACAA
          1 AAATTGTTGCTCTGTTGACAA

                
        408 AAAT
          1 AAAT

        412 ATTGACCAAG


Statistics
Matches: 21,  Mismatches: 4, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  21   21  1.00

ACGTcount: A:0.28, C:0.11, G:0.15, T:0.46


Consensus pattern (21 bp):   
AAATTGTTGCTCTGTTGACAA
Done.