Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002232.1 Kokia drynarioides strain JFW-HI SEQ_114232, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6930
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.35


Found at i:6909 original size:48 final size:48

Alignment explanation


    Indices: 6763--6925  Score: 150
    Period size: 48  Copynumber: 3.3  Consensus size: 48

       6753 GTAGACTGGA

                       *                  *               *  
       6763 GTGGGTGGTGGGGGAGACTTGTACTTGTAGGGGTGCTTGGGTGGTGCTG
          1 GTGGGTGGTGGTGGAGACTTGTACTTGTAGAGGTGCTT-GGTGGTGATG

                      **   *        *   *     *                
       6812 GTGATGGTGGAAGTGAAGACTTGTGCTTATAGAGATGCTTGCGTGGTGATG
          1 GTG--GGTGGTGGTGGAGACTTGTACTTGTAGAGGTGCTTG-GTGGTGATG

                                         *            *      
       6863 GTGGG-GGTGGTGGAGACTTGTACTTGTAAAGGTGCTTAGGTAGTGATG
          1 GTGGGTGGTGGTGGAGACTTGTACTTGTAGAGGTGCTT-GGTGGTGATG

             *         *    
       6911 GCGGG-GGTGGCGGAG
          1 GTGGGTGGTGGTGGAG

       6926 GAGAC


Statistics
Matches: 91,  Mismatches: 19, Indels: 9
        0.76            0.16        0.08

Matches are distributed among these distances:
  48   46  0.51
  49    6  0.07
  50    1  0.01
  51   38  0.42

ACGTcount: A:0.15, C:0.08, G:0.48, T:0.29


Consensus pattern (48 bp):   
GTGGGTGGTGGTGGAGACTTGTACTTGTAGAGGTGCTTGGTGGTGATG
Done.