Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002243.1 Kokia drynarioides strain JFW-HI SEQ_114249, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8854
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34


Found at i:8388 original size:59 final size:59

Alignment explanation


    Indices: 8294--8669  Score: 583
    Period size: 59  Copynumber: 6.4  Consensus size: 59

       8284 GCACGGGGGC

                      *    *  *       * *                         *    
       8294 AAAATGGT-AGTTTTGGAGGGTTCGGAGACAAAAATGGGATTTTTGGAAGTTCGGGGGT
          1 AAAATGGTAATTTTTAGAAGGTTCGGGGTCAAAAATGGGATTTTTGGAAGTTCGAGGGT

                                                                 *     
       8352 AAAATGGTAATTTTTAGAAGGTTCGGGGTCAAAAATGGGATTTTTGGAAGTTCAAGGGT
          1 AAAATGGTAATTTTTAGAAGGTTCGGGGTCAAAAATGGGATTTTTGGAAGTTCGAGGGT

                               *     *   *       *                     
       8411 AAAATGGTAATTTTTAGAATGTTCGAGGTAAAAAATGAGATTTTTGGAAGTTCGAGGGT
          1 AAAATGGTAATTTTTAGAAGGTTCGGGGTCAAAAATGGGATTTTTGGAAGTTCGAGGGT

                                                 *                     
       8470 AAAATGGTAATTTTTAGAAGGTTCGGGGTCAAAAATGAGATTTTTGGAAGTTCGAGGGT
          1 AAAATGGTAATTTTTAGAAGGTTCGGGGTCAAAAATGGGATTTTTGGAAGTTCGAGGGT

                                 *     *                               
       8529 AAAATGGTAATTTTTAGAAGGCTCGGGTTCAAAAATGGGATTTTTGGAAGTTCGAGGGT
          1 AAAATGGTAATTTTTAGAAGGTTCGGGGTCAAAAATGGGATTTTTGGAAGTTCGAGGGT

                                                                  *    
       8588 AAAATGGTAATTTTTAGAAGGTTCGGGGTCAAAAATGGGATTTTTGGAAGTTCGGGGGT
          1 AAAATGGTAATTTTTAGAAGGTTCGGGGTCAAAAATGGGATTTTTGGAAGTTCGAGGGT

                   *      * *      
       8647 AAAATGGCAATTTTCAAAAGGTT
          1 AAAATGGTAATTTTTAGAAGGTT

       8670 TAGGGACCTT


Statistics
Matches: 293,  Mismatches: 24, Indels: 1
        0.92            0.08        0.00

Matches are distributed among these distances:
  58    8  0.03
  59  285  0.97

ACGTcount: A:0.32, C:0.05, G:0.31, T:0.32


Consensus pattern (59 bp):   
AAAATGGTAATTTTTAGAAGGTTCGGGGTCAAAAATGGGATTTTTGGAAGTTCGAGGGT

Done.