Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002248.1 Kokia drynarioides strain JFW-HI SEQ_114255, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4417
ACGTcount: A:0.32, C:0.22, G:0.13, T:0.33


Found at i:2814 original size:24 final size:24

Alignment explanation


    Indices: 2787--2839  Score: 97
    Period size: 24  Copynumber: 2.2  Consensus size: 24

       2777 CTCACCACCC

                            *       
       2787 TCACCCTCACCACCTTTATTACCA
          1 TCACCCTCACCACCTTCATTACCA

                                    
       2811 TCACCCTCACCACCTTCATTACCA
          1 TCACCCTCACCACCTTCATTACCA

                 
       2835 TCACC
          1 TCACC

       2840 ATAAAATTGC


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  24   28  1.00

ACGTcount: A:0.25, C:0.49, G:0.00, T:0.26


Consensus pattern (24 bp):   
TCACCCTCACCACCTTCATTACCA
Done.