Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002249.1 Kokia drynarioides strain JFW-HI SEQ_114256, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 618

Length: 1030
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.40


Found at i:897 original size:219 final size:218

Alignment explanation


    Indices: 501--943  Score: 543
    Period size: 219  Copynumber: 2.0  Consensus size: 218

        491 TCAAGATCAT

                                                                    *        
        501 TCATTTTGAAAACCAAGTTTTGGTCTTCAAACTAAAAACTTATTTACGTGAGAATTGTTTCTCCT
          1 TCATTTTGAAAACCAAGTTTTGGTCTTCAAACTAAAAACTTATTTACGTGAGAATTATTTCTCCT

              **         *        *                           *       *      
        566 TTGGTTCTTAGACGAACTTCTGGACTGGTCAAGCTTTTTACGAGTTCTTTTATAACTTTGGTCCC
         66 TTCATTCTTAGACAAACTTCTGAACTGGTCAAGCTTTTTACGAGTTCTTTAATAACTTCGGTCCC

                 *                *        *                 **             *
        631 TTAAAGTATTCAAGACGATCCATTCCTTCGATCAATATTTCGAACATTCCGTGCTCGGGAAATCG
        131 TTAAACTATTCAAGACGATCCAATCCTTCGAGCAATATTTCGAACATTCAATGCTCGGGAAATCA

                   * *  *          
        696 CATCATTCGTTCTAAATAGTTTG
        196 CATCATTAGGTCAAAATAGTTTG

                    *        *           *  *               *                
        719 TCATTTTGGAAA-CAACTTTTTGGTCTT-GAATTAAAAA-TATATTTATGTGAGAATTATTTCTC
          1 TCATTTTGAAAACCAA-GTTTTGGTCTTCAAACTAAAAACT-TATTTACGTGAGAATTATTTCTC

            *                           *              * *                   
        781 TTTTCATTCTTAGACAAACTTCTGAACTTGTCAAGC-TTTTACTATTTCTCCTATAATAACTTCG
         64 CTTTCATTCTTAGACAAACTTCTGAACTGGTCAAGCTTTTTACGAGTTCT--T-TAATAACTTCG

              **                *                        *                   
        845 GTTGCTTAAACTATTCAAGATGATCCAATCCTTCGAGCAATATTTTGAACATTCAATGCTCGGGA
        126 GTCCCTTAAACTATTCAAGACGATCCAATCCTTCGAGCAATATTTCGAACATTCAATGCTCGGGA

                                        
        910 AATCACATCATTAGGTCAAAATAGTTTG
        191 AATCACATCATTAGGTCAAAATAGTTTG

            *     
        938 CCATTT
          1 TCATTT

        944 ATAAAAAAAA


Statistics
Matches: 190,  Mismatches: 30, Indels: 9
        0.83            0.13        0.04

Matches are distributed among these distances:
 216   12  0.06
 217   62  0.33
 218   22  0.12
 219   94  0.49

ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39


Consensus pattern (218 bp):   
TCATTTTGAAAACCAAGTTTTGGTCTTCAAACTAAAAACTTATTTACGTGAGAATTATTTCTCCT
TTCATTCTTAGACAAACTTCTGAACTGGTCAAGCTTTTTACGAGTTCTTTAATAACTTCGGTCCC
TTAAACTATTCAAGACGATCCAATCCTTCGAGCAATATTTCGAACATTCAATGCTCGGGAAATCA
CATCATTAGGTCAAAATAGTTTG
Done.