Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002250.1 Kokia drynarioides strain JFW-HI SEQ_114258, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 30801
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:669 original size:12 final size:12

Alignment explanation


    Indices: 633--672  Score: 55
    Period size: 12  Copynumber: 3.3  Consensus size: 12

        623 TTTGCCTCGA

                        
        633 CTTCTTTTCCTT
          1 CTTCTTTTCCTT

             *           
        645 CCTCTATTT-CTT
          1 CTTCT-TTTCCTT

                        
        657 CTTCTTTTCCTT
          1 CTTCTTTTCCTT

                
        669 CTTC
          1 CTTC

        673 GTATTCCACT


Statistics
Matches: 24,  Mismatches: 2, Indels: 4
        0.80            0.07        0.13

Matches are distributed among these distances:
  11    3  0.12
  12   18  0.75
  13    3  0.12

ACGTcount: A:0.03, C:0.35, G:0.00, T:0.62


Consensus pattern (12 bp):   
CTTCTTTTCCTT

Found at i:684 original size:24 final size:24

Alignment explanation


    Indices: 632--686  Score: 67
    Period size: 24  Copynumber: 2.3  Consensus size: 24

        622 ATTTGCCTCG

                                   *
        632 ACTTCTTTTCCTTCCTCTATTTCT
          1 ACTTCTTTTCCTTCCTCTATTTCC

            *             *          
        656 TCTTCTTTTCCTTCTTCGTA-TTCC
          1 ACTTCTTTTCCTTCCTC-TATTTCC

                   
        680 ACTTCTT
          1 ACTTCTT

        687 CTACTCGTGT


Statistics
Matches: 26,  Mismatches: 4, Indels: 2
        0.81            0.12        0.06

Matches are distributed among these distances:
  24   24  0.92
  25    2  0.08

ACGTcount: A:0.07, C:0.33, G:0.02, T:0.58


Consensus pattern (24 bp):   
ACTTCTTTTCCTTCCTCTATTTCC

Found at i:14456 original size:11 final size:11

Alignment explanation


    Indices: 14440--14464  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

      14430 GCATTGACAA

                       
      14440 TGACATAAGGT
          1 TGACATAAGGT

                       
      14451 TGACATAAGGT
          1 TGACATAAGGT

               
      14462 TGA
          1 TGA

      14465 TACTCGCGCT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.36, C:0.08, G:0.28, T:0.28


Consensus pattern (11 bp):   
TGACATAAGGT
Done.