genome.fa.s2267.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01002267.1 Kokia drynarioides strain JFW-HI SEQ_114289, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32858

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
800--845	21	2.2	21	88	7	67	43	4	6	45	1.49
2866--3052	52	3.6	51	87	3	252	25	16	23	34	1.95
2863--3101	52	4.6	52	84	3	216	27	16	23	33	1.95
2862--3101	104	2.3	102	79	4	275	27	16	22	33	1.95
3201--3287	43	2.0	43	100	0	174	27	13	20	37	1.91
6974--7175	87	2.3	86	83	6	230	32	6	26	34	1.82
7002--7349	29	11.9	28	74	13	215	34	4	25	35	1.77
7031--7361	59	5.6	59	75	13	222	35	4	24	35	1.76
6973--7252	87	3.2	83	79	9	224	31	6	27	34	1.81
7012--7361	30	12.0	30	73	10	183	34	4	24	36	1.77
8996--9047	17	3.1	17	82	0	68	55	5	3	34	1.42
9581--10450	208	4.2	208	85	2	1095	21	22	18	36	1.95
10719--11372	50	13.1	50	75	9	361	15	29	18	35	1.92
10719--11344	151	4.2	150	79	6	628	15	30	18	35	1.92
12414--12475	30	2.1	30	100	0	124	29	33	9	27	1.88
15635--15712	6	13.5	6	72	12	65	57	3	0	38	1.17
15635--15694	17	3.5	17	86	2	84	58	3	0	38	1.15
15635--15712	23	3.4	23	82	12	81	57	3	0	38	1.17
16094--17637	209	7.5	209	80	7	1544	22	20	18	37	1.94
16141--17637	407	3.6	408	85	3	1774	22	20	18	37	1.94
16094--17568	617	2.4	604	82	5	1653	22	21	18	37	1.94
28508--28589	34	2.4	32	81	16	87	64	8	8	18	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28522--28589	34	2.0	36	83	13	92	66	8	7	17	1.42
28658--28787	29	4.5	28	78	9	97	35	7	23	33	1.83
28685--28989	29	10.5	29	72	13	123	36	6	22	34	1.80
28680--28844	59	2.8	57	81	8	174	34	7	24	33	1.83
28685--28845	29	5.5	29	76	15	129	34	7	22	34	1.83
28831--28966	59	2.3	59	76	10	138	40	5	21	33	1.75
28858--28989	59	2.3	58	83	9	153	39	4	21	34	1.74
28947--29060	28	4.0	30	77	17	134	35	3	25	35	1.73
28948--29138	30	6.5	29	76	14	126	36	3	21	38	1.69
29059--29149	30	3.0	31	79	12	107	35	2	18	43	1.62
30286--30315	15	2.0	15	93	0	51	26	0	10	63	1.26
31015--31107	17	5.4	17	83	6	116	53	2	2	41	1.25
31015--31107	6	16.2	6	69	16	63	53	2	2	41	1.25
31035--31089	11	4.8	12	80	6	51	56	1	1	40	1.21
32288--32473	93	2.0	92	90	1	291	37	9	9	43	1.71

Tables:   1

The End!