Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000227.1 Kokia drynarioides strain JFW-HI SEQ_110946, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2262
ACGTcount: A:0.35, C:0.18, G:0.14, T:0.33


Found at i:1216 original size:16 final size:16

Alignment explanation


    Indices: 1191--1221  Score: 53
    Period size: 16  Copynumber: 1.9  Consensus size: 16

       1181 TTAATTTTTA

                 *          
       1191 ATTTAGAAAAAACATC
          1 ATTTAAAAAAAACATC

                           
       1207 ATTTAAAAAAAACAT
          1 ATTTAAAAAAAACAT

       1222 ACACAACAAT


Statistics
Matches: 14,  Mismatches: 1, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  16   14  1.00

ACGTcount: A:0.61, C:0.10, G:0.03, T:0.26


Consensus pattern (16 bp):   
ATTTAAAAAAAACATC
Done.