Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002270.1 Kokia drynarioides strain JFW-HI SEQ_114294, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 621

Length: 1035
ACGTcount: A:0.34, C:0.16, G:0.14, T:0.37


Found at i:415 original size:48 final size:48

Alignment explanation


    Indices: 363--454  Score: 157
    Period size: 48  Copynumber: 1.9  Consensus size: 48

        353 GACGTTATAC

                        *         *         *               
        363 TTAGGCCAGAACGTCCTTGCTAGTCAATAATTGTGGACAATTAGGTAG
          1 TTAGGCCAGAACATCCTTGCTACTCAATAATTATGGACAATTAGGTAG

                                                        
        411 TTAGGCCAGAACATCCTTGCTACTCAATAATTATGGACAATTAG
          1 TTAGGCCAGAACATCCTTGCTACTCAATAATTATGGACAATTAG

        455 ATCCCTTTGA


Statistics
Matches: 41,  Mismatches: 3, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  48   41  1.00

ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29


Consensus pattern (48 bp):   
TTAGGCCAGAACATCCTTGCTACTCAATAATTATGGACAATTAGGTAG
Done.