Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000228.1 Kokia drynarioides strain JFW-HI SEQ_110950, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 711

Length: 1186
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.33


Found at i:846 original size:29 final size:29

Alignment explanation


    Indices: 779--846  Score: 77
    Period size: 29  Copynumber: 2.3  Consensus size: 29

        769 GTAACAAAAT

                                          *
        779 AATAACATAAGTGATTAAAACGTAACATTTT
          1 AATAA-ATAAGTGATTAAAACGTAACA-TTG

                *                        
        810 AA-ACATAAGTGATTAAAACGTAAC-TTG
          1 AATAAATAAGTGATTAAAACGTAACATTG

                      
        837 AGATAAATAA
          1 A-ATAAATAA

        847 AAGTTACTAT


Statistics
Matches: 32,  Mismatches: 3, Indels: 6
        0.78            0.07        0.15

Matches are distributed among these distances:
  27    3  0.09
  28    1  0.03
  29   25  0.78
  30    1  0.03
  31    2  0.06

ACGTcount: A:0.51, C:0.09, G:0.12, T:0.28


Consensus pattern (29 bp):   
AATAAATAAGTGATTAAAACGTAACATTG
Done.