Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002280.1 Kokia drynarioides strain JFW-HI SEQ_114305, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3109
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34


Found at i:2499 original size:22 final size:21

Alignment explanation


    Indices: 2464--2510  Score: 58
    Period size: 22  Copynumber: 2.2  Consensus size: 21

       2454 GGTTAAAATG

                     *         *  
       2464 TAATTATATTTACAATAATTTA
          1 TAATTATATCTACAAT-ATATA

                 *               
       2486 TAATTTTATCTACAATATATA
          1 TAATTATATCTACAATATATA

                
       2507 TAAT
          1 TAAT

       2511 CATAAGTTTG


Statistics
Matches: 22,  Mismatches: 3, Indels: 1
        0.85            0.12        0.04

Matches are distributed among these distances:
  21    8  0.36
  22   14  0.64

ACGTcount: A:0.45, C:0.06, G:0.00, T:0.49


Consensus pattern (21 bp):   
TAATTATATCTACAATATATA

Found at i:3023 original size:26 final size:26

Alignment explanation


    Indices: 2970--3026  Score: 78
    Period size: 26  Copynumber: 2.2  Consensus size: 26

       2960 AATAAAACAA

                *              * * *  
       2970 ATATGCATAATACCAAAAATATATAT
          1 ATATACATAATACCAAAAAAAAAAAT

                                      
       2996 ATATACATAATACCAAAAAAAAAAAT
          1 ATATACATAATACCAAAAAAAAAAAT

                 
       3022 ATATA
          1 ATATA

       3027 TATATATATA


Statistics
Matches: 27,  Mismatches: 4, Indels: 0
        0.87            0.13        0.00

Matches are distributed among these distances:
  26   27  1.00

ACGTcount: A:0.61, C:0.11, G:0.02, T:0.26


Consensus pattern (26 bp):   
ATATACATAATACCAAAAAAAAAAAT
Done.