Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002282.1 Kokia drynarioides strain JFW-HI SEQ_114312, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 804

Length: 1340
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32


Found at i:268 original size:31 final size:31

Alignment explanation


    Indices: 232--291  Score: 93
    Period size: 31  Copynumber: 1.9  Consensus size: 31

        222 CTTTTTGCAT

                    *                      
        232 TTTGTATAGCCGAGGAAAGTTCGTAACTTAC
          1 TTTGTATAACCGAGGAAAGTTCGTAACTTAC

                     *     *             
        263 TTTGTATAATCGAGGTAAGTTCGTAACTT
          1 TTTGTATAACCGAGGAAAGTTCGTAACTT

        292 TGAATTTAAA


Statistics
Matches: 26,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  31   26  1.00

ACGTcount: A:0.28, C:0.13, G:0.22, T:0.37


Consensus pattern (31 bp):   
TTTGTATAACCGAGGAAAGTTCGTAACTTAC
Done.