Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002284.1 Kokia drynarioides strain JFW-HI SEQ_114314, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7381
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34


Found at i:671 original size:33 final size:33

Alignment explanation


    Indices: 540--672  Score: 140
    Period size: 33  Copynumber: 4.0  Consensus size: 33

        530 TCTACATAAG

                               *  *         *
        540 TGATTGGAACATCTATCAGCGCCGCTTCATCAA
          1 TGATTGGAACATCTATCAGGGCAGCTTCATCAT

                               *   *         
        573 TGATTGGAACATCTATCAGTGCAACTTCATCAT
          1 TGATTGGAACATCTATCAGGGCAGCTTCATCAT

                 *        *   *     *        
        606 TGATTCGAACATCTCTCAAGGCAGTTTCATCAT
          1 TGATTGGAACATCTATCAGGGCAGCTTCATCAT

             *          * *       *    *     
        639 TCATTGGAACATTTGTCAGGGCCGCTTGATCAT
          1 TGATTGGAACATCTATCAGGGCAGCTTCATCAT

             
        672 T
          1 T

        673 TTGTTCAACT


Statistics
Matches: 82,  Mismatches: 18, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  33   82  1.00

ACGTcount: A:0.26, C:0.23, G:0.18, T:0.32


Consensus pattern (33 bp):   
TGATTGGAACATCTATCAGGGCAGCTTCATCAT

Found at i:6176 original size:24 final size:24

Alignment explanation


    Indices: 6090--6164  Score: 132
    Period size: 24  Copynumber: 3.1  Consensus size: 24

       6080 AGAAATAATC

                                   *
       6090 TTTCAATTAAACTCTATTTATTTA
          1 TTTCAATTAAACTCTATTTATTTG

                           *        
       6114 TTTCAATTAAACTCTGTTTATTTG
          1 TTTCAATTAAACTCTATTTATTTG

                                    
       6138 TTTCAATTAAACTCTATTTATTTG
          1 TTTCAATTAAACTCTATTTATTTG

               
       6162 TTT
          1 TTT

       6165 GAGGTAAACT


Statistics
Matches: 48,  Mismatches: 3, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  24   48  1.00

ACGTcount: A:0.28, C:0.12, G:0.04, T:0.56


Consensus pattern (24 bp):   
TTTCAATTAAACTCTATTTATTTG
Done.