Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002285.1 Kokia drynarioides strain JFW-HI SEQ_114316, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3843
ACGTcount: A:0.35, C:0.13, G:0.14, T:0.38


Found at i:2055 original size:33 final size:33

Alignment explanation


    Indices: 1987--2103  Score: 121
    Period size: 33  Copynumber: 3.5  Consensus size: 33

       1977 GACTCGAGAA

                      *   *     * *        *  
       1987 ATGTTCCAATGAATGATGAAACTGC-CTCGAGAG
          1 ATGTTCCAATCAATTATGAAGCGGCACT-GATAG

                  *              **          
       2020 ATGTTCGAATCAATTATGAAGTTGCACTGATAG
          1 ATGTTCCAATCAATTATGAAGCGGCACTGATAG

                                              
       2053 ATGTTCCAATC-ATTGATGAAGCGGCACTGATAG
          1 ATGTTCCAATCAATT-ATGAAGCGGCACTGATAG

                        *     
       2086 ATGTTCCAATCACTTATG
          1 ATGTTCCAATCAATTATG

       2104 TAGAGAATTT


Statistics
Matches: 71,  Mismatches: 10, Indels: 6
        0.82            0.11        0.07

Matches are distributed among these distances:
  32    3  0.04
  33   64  0.90
  34    4  0.06

ACGTcount: A:0.32, C:0.17, G:0.21, T:0.30


Consensus pattern (33 bp):   
ATGTTCCAATCAATTATGAAGCGGCACTGATAG
Done.