Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002297.1 Kokia drynarioides strain JFW-HI SEQ_114330, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5939
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36


Found at i:839 original size:31 final size:31

Alignment explanation


    Indices: 781--840  Score: 93
    Period size: 31  Copynumber: 1.9  Consensus size: 31

        771 AACTCGAATA

                          *      **        
        781 ATTTCACTCGACTCGATTCGACTCAAATTTC
          1 ATTTCACTCGACTCAATTCGAAACAAATTTC

                                         
        812 ATTTCACTCGACTCAATTCGAAACAAATT
          1 ATTTCACTCGACTCAATTCGAAACAAATT

        841 CAAATTGAGT


Statistics
Matches: 26,  Mismatches: 3, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  31   26  1.00

ACGTcount: A:0.32, C:0.27, G:0.08, T:0.33


Consensus pattern (31 bp):   
ATTTCACTCGACTCAATTCGAAACAAATTTC

Found at i:5650 original size:22 final size:22

Alignment explanation


    Indices: 5607--5650  Score: 61
    Period size: 23  Copynumber: 2.0  Consensus size: 22

       5597 AAAATTATTT

                       * *        
       5607 AATAATTTTATTACTTTAAAAA
          1 AATAATTTTATAAATTTAAAAA

                                  
       5629 AATAATTTTAATAAATTTAAAA
          1 AATAATTTT-ATAAATTTAAAA

       5651 TCTTTATTGA


Statistics
Matches: 19,  Mismatches: 2, Indels: 1
        0.86            0.09        0.05

Matches are distributed among these distances:
  22    9  0.47
  23   10  0.53

ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43


Consensus pattern (22 bp):   
AATAATTTTATAAATTTAAAAA
Done.