Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000230.1 Kokia drynarioides strain JFW-HI SEQ_110952, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5088
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34


Found at i:559 original size:21 final size:21

Alignment explanation


    Indices: 517--559  Score: 52
    Period size: 22  Copynumber: 2.0  Consensus size: 21

        507 AGTTAAAATT

                      * *        
        517 TAAATATTTTTTTACTATAAA
          1 TAAATATTTTGTGACTATAAA

                                  
        538 TAAATTATTTTGTGACTA-AAA
          1 TAAA-TATTTTGTGACTATAAA

             
        559 T
          1 T

        560 TTAAGGCGTT


Statistics
Matches: 19,  Mismatches: 2, Indels: 2
        0.83            0.09        0.09

Matches are distributed among these distances:
  21    8  0.42
  22   11  0.58

ACGTcount: A:0.42, C:0.05, G:0.05, T:0.49


Consensus pattern (21 bp):   
TAAATATTTTGTGACTATAAA

Found at i:1548 original size:17 final size:18

Alignment explanation


    Indices: 1521--1554  Score: 52
    Period size: 17  Copynumber: 1.9  Consensus size: 18

       1511 ATTTAATTTG

                              
       1521 TAAAAATAATTATAAACT
          1 TAAAAATAATTATAAACT

                       *     
       1539 TAAAAA-AATTTTAAAC
          1 TAAAAATAATTATAAAC

       1555 GTTTTTAAAA


Statistics
Matches: 15,  Mismatches: 1, Indels: 1
        0.88            0.06        0.06

Matches are distributed among these distances:
  17    9  0.60
  18    6  0.40

ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32


Consensus pattern (18 bp):   
TAAAAATAATTATAAACT
Done.