Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002308.1 Kokia drynarioides strain JFW-HI SEQ_114348, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5975
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34


Found at i:4778 original size:3 final size:3

Alignment explanation


    Indices: 4772--4797  Score: 52
    Period size: 3  Copynumber: 8.7  Consensus size: 3

       4762 TAATAATAAT

                                              
       4772 AAG AAG AAG AAG AAG AAG AAG AAG AA
          1 AAG AAG AAG AAG AAG AAG AAG AAG AA

       4798 CTAAATATAT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   3   23  1.00

ACGTcount: A:0.69, C:0.00, G:0.31, T:0.00


Consensus pattern (3 bp):   
AAG

Done.