Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01000231.1 Kokia drynarioides strain JFW-HI SEQ_110955, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5523
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.29


Found at i:3542 original size:89 final size:89

Alignment explanation


    Indices: 3391--3590  Score: 391
    Period size: 89  Copynumber: 2.2  Consensus size: 89

       3381 CTCACCTGGA

                                                                             
       3391 AATGACAAATTCATTGAAGCCATATTACCTCTGATGAATGTATTTTCAGAAAGGTTGACACAAGC
          1 AATGACAAATTCATTGAAGCCATATTACCTCTGATGAATGTATTTTCAGAAAGGTTGACACAAGC

                                    
       3456 TTTGTCCCTAGAGTCAGAATTAGG
         66 TTTGTCCCTAGAGTCAGAATTAGG

                                      *                                      
       3480 AATGACAAATTCATTGAAGCCATATTTCCTCTGATGAATGTATTTTCAGAAAGGTTGACACAAGC
          1 AATGACAAATTCATTGAAGCCATATTACCTCTGATGAATGTATTTTCAGAAAGGTTGACACAAGC

                                    
       3545 TTTGTCCCTAGAGTCAGAATTAGG
         66 TTTGTCCCTAGAGTCAGAATTAGG

                                  
       3569 AATGACAAATTCATTGAAGCCA
          1 AATGACAAATTCATTGAAGCCA

       3591 AGGGAAAGTG


Statistics
Matches: 110,  Mismatches: 1, Indels: 0
        0.99            0.01        0.00

Matches are distributed among these distances:
  89  110  1.00

ACGTcount: A:0.34, C:0.17, G:0.18, T:0.30


Consensus pattern (89 bp):   
AATGACAAATTCATTGAAGCCATATTACCTCTGATGAATGTATTTTCAGAAAGGTTGACACAAGC
TTTGTCCCTAGAGTCAGAATTAGG
Done.