Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: NTFQ01002312.1 Kokia drynarioides strain JFW-HI SEQ_114354, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1738
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30


Found at i:702 original size:114 final size:114

Alignment explanation


    Indices: 495--705  Score: 255
    Period size: 114  Copynumber: 1.9  Consensus size: 114

        485 CCTCAAACCT

                         *     **                                *         * 
        495 GAACACTACCAAAGCCCAATGACACCTCAAAACAAGTTCCGAGAATGTCACAATCCTCAAGTTTG
          1 GAACACTACCAAAACCCAACAACACCTCAAAACAAGTTCCGAGAATGTCACAAGCCTCAAGTTCG

            *                    *                           
        560 GGCAGATAAAACAACCGCAGCTGAATTTTGCCTCATTCTGGTGAGCTCA
         66 AGCAGATAAAACAACCGCAGCAGAATTTTGCCTCATTCTGGTGAGCTCA

                                                   ** *         **  *        
        609 GAACACTACCAAAACCCAACAACATCC-CAAAACAAGTTTTGGGAATGTCACGGGCTTCAAGTTC
          1 GAACACTACCAAAACCCAACAACA-CCTCAAAACAAGTTCCGAGAATGTCACAAGCCTCAAGTTC

                        *     *               
        673 GAGCAGATAAAATAACCGTAGCCAG-ATTTTGCC
         65 GAGCAGATAAAACAACCGCAG-CAGAATTTTGCC

        706 CCGCGTCCTG


Statistics
Matches: 80,  Mismatches: 15, Indels: 4
        0.81            0.15        0.04

Matches are distributed among these distances:
 114   76  0.95
 115    4  0.05

ACGTcount: A:0.36, C:0.27, G:0.18, T:0.20


Consensus pattern (114 bp):   
GAACACTACCAAAACCCAACAACACCTCAAAACAAGTTCCGAGAATGTCACAAGCCTCAAGTTCG
AGCAGATAAAACAACCGCAGCAGAATTTTGCCTCATTCTGGTGAGCTCA
Done.