genome.fa.s2332.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01002332.1 Kokia drynarioides strain JFW-HI SEQ_114380, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68881

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
73--135	7	9.1	7	76	11	51	0	28	0	71	0.86
93--135	4	10.8	4	85	9	61	0	23	0	76	0.78
82--139	21	2.5	23	75	18	66	0	27	0	72	0.85
83--146	11	5.5	11	80	10	65	1	25	0	73	0.92
85--135	21	2.4	21	87	9	68	0	25	0	74	0.82
1012--1048	3	12.3	3	94	0	65	29	67	2	0	1.04
3896--3945	20	2.4	21	81	15	52	48	0	10	42	1.37
4034--4063	3	10.0	3	100	0	60	0	33	0	66	0.92
5627--5656	3	10.0	3	100	0	60	0	33	0	66	0.92
6813--7001	94	2.0	94	97	0	360	33	7	19	39	1.80
6989--7200	43	4.9	43	84	4	230	35	10	23	31	1.88
9758--9969	79	2.7	79	89	0	325	33	27	17	20	1.96
13417--13477	21	2.9	22	75	7	63	27	18	16	37	1.92
16973--17141	43	4.1	42	77	9	152	25	26	10	37	1.88
16981--17141	83	1.9	83	81	7	193	24	26	11	37	1.89
24317--24574	27	9.6	27	78	1	178	28	20	13	37	1.91
24337--24530	81	2.4	80	80	3	210	29	20	12	38	1.89
24409--24562	81	1.9	81	83	2	202	31	19	11	38	1.87
39506--39564	29	2.0	30	86	3	84	50	15	3	30	1.60
40338--40371	18	1.9	18	88	5	52	73	5	2	17	1.16
41380--41432	27	2.0	27	92	0	88	32	11	13	43	1.79
45154--45599	42	10.8	42	84	6	506	23	15	25	35	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45154--45599	120	3.6	122	84	6	508	23	15	25	35	1.94
61072--61138	21	3.1	21	78	6	64	34	22	17	25	1.96
62366--62400	18	1.9	18	94	0	61	40	17	5	37	1.73
64450--65120	60	11.5	58	77	11	538	28	17	15	38	1.91
65939--65971	17	1.9	17	88	11	50	63	3	6	27	1.32
65940--66049	30	3.7	30	86	0	139	62	4	3	29	1.32
65929--66029	18	5.3	18	69	22	55	61	3	4	29	1.35
67207--67288	33	2.5	32	81	11	87	59	2	4	32	1.31
67228--67293	33	1.9	36	87	9	102	57	1	3	37	1.23
67275--67313	20	1.9	20	89	5	60	61	2	10	25	1.41
67231--67334	53	2.0	53	87	7	151	61	1	5	30	1.30
68339--68388	22	2.3	22	82	6	57	20	8	34	38	1.82
68351--68409	22	2.7	22	86	5	75	25	8	28	37	1.85
68520--68664	45	3.2	45	63	13	105	46	1	6	45	1.38
68499--68878	93	4.1	94	94	1	588	46	3	6	43	1.46
68777--68839	32	1.9	33	84	9	85	46	0	3	50	1.17

Tables:   1

The End!